Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glaberrima_20[genbank_20GCA_5F000147395.2_202010-09-22] 25,599 sequences; 303,294,962 total letters Query= NC_023615.1 Length=196456 Score E Sequences producing significant alignments: (Bits) Value seq6944 107 2e-18 >seq6944 Length=13497 Score = 107 bits (118), Expect = 2e-18 Identities = 163/227 (72%), Gaps = 4/227 (2%) Strand=Plus/Plus Query 192954 GATGGTTGTAGAATAGTTAAAGTTGTTATTGG-TCAGTTACGTATACCTGAAATAGGGGA 193012 ||||||| ||| | ||||| ||| || | |||||| |||||||| | || ||||| Sbjct 9429 GATGGTTTAAGATTTGTTAAGGTTAGAATGCGATCAGTT-CGTATACCACAGATTGGGGA 9487 Query 193013 TAAATTTTGTTCG-GGAATGGCCCAAAAAGGAACTTGTGGTATGATTTATTCACAAGAAG 193071 ||| ||| || || |||| | | ||||||||| || |||| |||| ||||||| | Sbjct 9488 TAAGTTTAGTAGTAGGCATGGTC-AGAAAGGAACTGTGGGAATGACTTATACACAAGAGG 9546 Query 193072 ATATGCCATTTACAACTTCAGGTATGGTACCAGATATTATTATTAATCCAAATTGTATTC 193131 | ||||| | || | | ||| || ||| ||||||||| | |||||| || ||||| Sbjct 9547 ACATGCCGTGGACTATTGAAGGCATCACACCTGATATTATTGTGAATCCACATGCTATTC 9606 Query 193132 CGTCCAGAATGACCATTAATCAAATTATTGCTACTGTTATGGGTAAA 193178 | ||| | ||||| ||| |||| | |||| | ||||||||||| Sbjct 9607 CATCCCGTATGACTATTGGTCAACTGATTGAGTGTATTATGGGTAAA 9653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628330077872640