Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glaberrima_20[genbank_20GCA_5F000147395.2_202010-09-22] 25,599 sequences; 303,294,962 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq6410 237 1e-56 seq21277 120 2e-21 seq25059 105 5e-17 seq3895 98.7 7e-15 seq24091 86.0 5e-11 seq23805 86.0 5e-11 >seq6410 Length=44208 Score = 237 bits (262), Expect = 1e-56 Identities = 704/1076 (65%), Gaps = 20/1076 (2%) Strand=Plus/Minus Query 281411 GTTGATTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACT 281470 |||| || || |||||| |||||| || ||||| ||||| || | ||||| ||| Sbjct 38670 GTTGTCTTGTCTTCGGCAGACACATTCAGGATACCGTTGGCGTCAATGTCAAAGCAGACA 38611 Query 281471 TCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGA 281530 || |||||||| || || | ||||| ||||| || || | |||| | || || Sbjct 38610 GTGATCTGAGGGACTCCCCTAGGGGCAGGAGGGATTCCAGACAGCTCAAATTTGCCAAGG 38551 Query 281531 TTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTT 281590 ||| || || | || | | | |||||||| | | || || || ||| Sbjct 38550 AGATTGTTGTCCCTGGTCCGTGTCCTCTCACCCTCATAGACCTGAATCAACACACCAGGC 38491 Query 281591 TGATTATCTGAATAAGTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCT 281649 || ||||| || || || | || || ||| || || |||||| || ||||| || Sbjct 38490 TGGTTATCGGAGTAGGTGGAGAAGAC-CTGCTCCTTCTTGGTAGGAATGGTGGTGTTCCT 38432 Query 281650 ATCAATAATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGAC 281709 || | ||||| | ||| || ||||| || | ||||||||| || ||||| || Sbjct 38431 TGGGATGAGCACTGTCATCACACCTCCCGCTGTCTCGAGACCAAGAGACAGTGGAGTCAC 38372 Query 281710 ATCAACTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTG 281769 ||||| || | || || || | || || | | ||| ||| ||||| || || Sbjct 38371 ATCAAGGAGAAGAAGATCCTGCACCTTCTCGTTCCCCTCTCCACTAAGGATAGCAGCCTG 38312 Query 281770 AATAGCAGCACCATATGCAACAGCTTCATCAGGATTAA--CAGTTTCATTTAGTTTTTTA 281827 | |||||||| ||||| |||||||||||||| |||| | || || |||| || Sbjct 38311 GACGGCAGCACCGTATGCCACAGCTTCATCAGGGTTAATGCTCTTGCAG--AGTTCCTTC 38254 Query 281828 CCATTGAAAAAATTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACT 281887 |||||||| |||| ||||| || ||| |||| || | || ||| || ||||| Sbjct 38253 CCATTGAAGAAATCCTGCAGAAGCTGCTGAACCCTAGGGATTCTAGTTGAACCACCAACA 38194 Query 281888 AATACAATTTCATGCACCTGTGAT-TTATCCAGTTTTGAATCCAATAAAACTTTTTCAAC 281946 | |||| ||||| || ||| | || |||| |||| |||| | || || || Sbjct 38193 AGGACAACATCATGGACA-GTGCTCTTGTCCATCTTTGCATCCCTCAGGCACTTCTCCAC 38135 Query 281947 GGGTTCAAGACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAG 282006 || || | || || || | ||| ||| || || || | ||||| || | Sbjct 38134 AGGCTCCATACATTTCCTGAAGAGGTCCATGTTAAGCTCCTCAAACCTGGCTCTGGTGAT 38075 Query 282007 AGTGACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGA 282066 ||| || |||||| || || || | ||||||| |||||| |||||||| | | Sbjct 38074 GGTGGAATAGAAATCAACACCCTCAAAGAGGGAATCAATTTCAATAGTAGTTTGGGCAGT 38015 Query 282067 AGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGC 282126 || || || | | || || | |||||||| ||| || || || | || || | | Sbjct 38014 GGAGGAGAGGGTCCTCTTTGCCCTTTCACATGATGTTCTGAGCCTCCTCAAAGCCCTGG- 37956 Query 282127 TGATTGATTC--AAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACA 282184 | || | | ||| | |||| ||||||||||| |||| ||| | | || Sbjct 37955 -GGTTCCCGCTGATATCCTTCTTATGCTTTCTCTTGAACTCTTGGACAAAGTGGTTCACC 37897 Query 282185 AGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGG 282244 || || || ||||| || || || || | | ||| | || | || ||| | || | Sbjct 37896 AGGCGGTTGTCAAAGTCCTCCCCACCAAGGTGAGTGTCACCAGCTGTTGCTTTCACCTCA 37837 Query 282245 AAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAA 282304 |||| || || |||| | | || | |||||| || |||||||| | |||||| Sbjct 37836 AAAATACCCTCCTCAATGGTAAGGAGGGAGACATCAAAAGTACCACCACCAAGGTCAAAA 37777 Query 282305 ATAAGTACATTCATTTCT-------TTGTCTTGGTTTTTATCAAGACCATACGCAAAAGC 282357 || || || ||| | || | ||| || || ||||||||||| |||| || Sbjct 37776 ATGAGCACGTTCTTCTCACCAACACTAGTCGCC-TTCTTGTCAAGACCATAAGCAATTGC 37718 Query 282358 AGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATC 282417 |||||| ||||| ||||| || || | || |||||||||||| ||||| |||||||| Sbjct 37717 AGCAGCTGTTGGCTCATTGATGATACGCATAACATTAAGACCCGCAATAACACCTGCATC 37658 Query 282418 TTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 282473 |||||| || || || || ||||| || || |||||||||||||| | ||| |||| Sbjct 37657 TTTAGTTGCCTGCCTCTGGGAATCATTGAAGTATGCAGGAACAGTGACAACAGCAT 37602 >seq21277 Length=58878 Score = 120 bits (132), Expect = 2e-21 Identities = 224/328 (68%), Gaps = 6/328 (2%) Strand=Plus/Minus Query 282152 TTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCC 282211 || |||||||| |||| ||| | | || | || || |||||||||||||| || Sbjct 49628 TTCCTCTTGAATTCTTGTACAAAGTGGTTGACCATGCGGTTGTCAAAATCTTCACCACCA 49569 Query 282212 AATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGA 282271 | | || | || | || || | || | || | || || |||| | | || Sbjct 49568 AGATGGGTGTCACCAGCTGTGGCCTTGACCTCAAAGATACCCTCCTCAATGGTAAGGAGG 49509 Query 282272 GTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCT--- 282328 | ||||||| ||| ||||| || | ||||| || || |||||| | || | Sbjct 49508 GAAACATCAAAGGTACCACCTCCAAGGTCAAAGATGAGGACATTCTTCTCACCAACGCTG 49449 Query 282329 -TGG--TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTC 282385 ||| || || ||||||||||| |||| ||| ||||||||||| || || || || | | Sbjct 49448 GTGGCCTTCTTGTCAAGACCATAGGCAATAGCTGCAGCAGTTGGCTCGTTGATGATGCGC 49389 Query 282386 AAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTA 282445 | ||||| ||||||||||| ||| ||||| || ||||| || || || || || || Sbjct 49388 ATGACATTGAGACCAGCAATCACTCCAGCATCCTTGGTGGCCTGCCTCTGGGAGTCATTG 49329 Query 282446 AAATATGCAGGAACAGTAATAACGGCAT 282473 || || ||||||||||| | ||| |||| Sbjct 49328 AAGTAGGCAGGAACAGTGACAACAGCAT 49301 >seq25059 Length=36308 Score = 105 bits (116), Expect = 5e-17 Identities = 138/190 (73%), Gaps = 6/190 (3%) Strand=Plus/Minus Query 282275 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTT 282334 |||||| ||| || || |||| ||||| | ||| | || |||| |||| || | Sbjct 17006 ACATCAAAGGTACCGCCTCCCAAGTCAAACACAAGAA---TCGTTTCGTTGTTTT---TC 16953 Query 282335 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 282394 || |||| |||||| |||| | |||||||| |||||||| ||||| | | ||| | Sbjct 16952 TTCTCAAAACCATAAGCAAGGGATGCAGCAGTCGGTTCATTTATAATGCGGAGAACTTCC 16893 Query 282395 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 282454 | || ||||| | ||| |||||||| || ||| || ||||| || || || |||||| Sbjct 16892 AATCCTGCAATACGTCCAGCATCTTTTGTTGCTGTCCTCTGTGAGTCATTGAAGTATGCA 16833 Query 282455 GGAACAGTAA 282464 |||||||||| Sbjct 16832 GGAACAGTAA 16823 >seq3895 Length=18476 Score = 98.7 bits (108), Expect = 7e-15 Identities = 114/154 (74%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 282344 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 282403 ||||| | | ||||||||||||||||||||| || || ||| |||| ||| |||||| Sbjct 7487 CCATAAGACAGAGCAGCAGCAGTTGGTTCATTGATGATCCTCTGGACATCAAGTCCAGCA 7546 Query 282404 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 282463 || | || ||||| || || || || | || | ||| |||||||| || ||||| ||| Sbjct 7547 ATGCGACCAGCATCCTTGGTTGCCTGACGCTGAGCATCATTAAAATAAGCTGGAACTGTA 7606 Query 282464 ATAACGGCATCTGTTACTTCTTTTCCAATATAAG 282497 || ||||| | || || ||| |||| |||| Sbjct 7607 ATCACGGCCTTTGAAACAGTTTTACCAAGGTAAG 7640 >seq24091 Length=9292 Score = 86.0 bits (94), Expect = 5e-11 Identities = 151/219 (69%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 282250 TCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAG 282309 ||| || |||| | | ||||| |||||| ||| |||||||| | || || || || Sbjct 5999 TCCCTCCTCAATGGTGAGAAGAGAGACATCAAAGGTACCACCACCAAGGTCGAAGATGAG 5940 Query 282310 TACATTCATTTCTTTGTCT-TGG-----TTTTTATCAAGACCATACGCAAAAGCAGCAGC 282363 || ||| | || | ||| || || ||||||||||| |||| |||||||| Sbjct 5939 GACGTTCTTCTCACCAACACTGGAAGCCTTCTTGTCAAGACCATAGGCAATGGCAGCAGC 5880 Query 282364 AGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGT 282423 ||| || ||||| || || | || ||||| || |||||||| | || || || || Sbjct 5879 AGTAGGCTCATTGATGATACGCATGACATTGAGGCCAGCAATGACCCTAGCGTCCTTGGT 5820 Query 282424 GGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGT 282462 || || || ||||| | ||| || || |||||||| || Sbjct 5819 AGCCTGCCTCTGTGAGTAGTTGAAGTAAGCAGGAACTGT 5781 >seq23805 Length=3120 Score = 86.0 bits (94), Expect = 5e-11 Identities = 151/219 (69%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 282250 TCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAG 282309 ||| || |||| | | ||||| |||||| ||| |||||||| | || || || || Sbjct 2374 TCCCTCCTCAATGGTGAGAAGAGAGACATCAAAGGTACCACCACCAAGGTCGAAGATGAG 2315 Query 282310 TACATTCATTTCTTTGTCT-TGG-----TTTTTATCAAGACCATACGCAAAAGCAGCAGC 282363 || ||| | || | ||| || || ||||||||||| |||| |||||||| Sbjct 2314 GACGTTCTTCTCACCAACACTGGAAGCCTTCTTGTCAAGACCATAGGCAATGGCAGCAGC 2255 Query 282364 AGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGT 282423 ||| || ||||| || || | || ||||| || |||||||| | || || || || Sbjct 2254 AGTAGGCTCATTGATGATACGCATGACATTGAGGCCAGCAATGACCCTAGCGTCCTTGGT 2195 Query 282424 GGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGT 282462 || || || ||||| | ||| || || |||||||| || Sbjct 2194 AGCCTGCCTCTGTGAGTAGTTGAAGTAAGCAGGAACTGT 2156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3739373597281374