Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glaberrima_20[genbank_20GCA_5F000147395.2_202010-09-22] 25,599 sequences; 303,294,962 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq10092 105 2e-17 seq5881 100 7e-16 seq11087 89.7 1e-12 seq7832 89.7 1e-12 seq2330 89.7 1e-12 seq7833 87.8 4e-12 seq6022 86.0 1e-11 seq10866 84.2 5e-11 seq1402 84.2 5e-11 >seq10092 Length=22630 Score = 105 bits (116), Expect = 2e-17 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || ||||| || || || || ||| |||| || || || || || Sbjct 17726 CAGATCTTCGTCAAGACTCTCACTGGCAAGACCATTACTCTGGAGGTTGAGAGCTCCGAT 17785 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| || || || ||||| ||| || ||| || Sbjct 17786 ACCATCGACAATGTGAAGGCTAAGATCCAGGACAAGGAAGGTATTCCCCCAGACCAGCAG 17845 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| |||||| |||||||||| | || | ||||| |||||| | Sbjct 17846 CGCCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGCCGTACCCTCGCCGACTACAACATT 17905 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| |||||||| || ||||| || Sbjct 17906 CAGAAGGAGTCTACCCTCCACCTGGT 17931 Score = 93.3 bits (102), Expect = 1e-13 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 204760 CAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATC 204819 || |||||||||||| || ||||| ||||||| || |||||||| | ||||| ||||| Sbjct 17479 CAGAACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTCCTGCCATC 17420 Query 204820 TTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 ||||||||||| ||||| || ||||| || || || Sbjct 17419 CTCCAGCTGCTTGCCGGCAAAAATAAGACGCTGCTG 17384 Score = 91.5 bits (100), Expect = 3e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || || || || || || || || | || || || || ||| Sbjct 17270 CAGATCTTTGTGAAGACCCTTACTGGCAAGACCATTACGCTTGAGGTTGAGTCATCAGAC 17329 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| || || || || || ||| || ||| || Sbjct 17330 ACGATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAGCAG 17389 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | ||||| || ||||| |||||| |||| ||||| ||||| | || || |||||| || Sbjct 17390 CGTCTTATTTTTGCCGGCAAGCAGCTGGAGGATGGCAGGACCCTCGCTGACTACAACATC 17449 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTG 206382 ||||| ||||| || |||||||||||| || Sbjct 17450 CAGAAGGAGTCCACCCTTCACCTTGTTCTG 17479 Score = 86.0 bits (94), Expect = 1e-11 Identities = 144/207 (70%), Gaps = 1/207 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || || ||| ||| || | || || || || ||||| | || || || |||||| Sbjct 17043 CAAATCTTTGTCAAGACCTTGACTGGCAAGACTATCACCCTTGAGGTTGAGTCTTCTGAT 17102 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| |||||| || || || || || ||| |||||| || Sbjct 17103 ACTATTGACAACGTTAAGGCAAAGATCCAGGACAAGGAGGGGATTCC-CCGGACCAGCAG 17161 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||| || || |||||| | || ||||| ||||| | || || |||||| || Sbjct 17162 CGTCTGATCTTTGCTGGCAAGCAGCTCGAGGATGGTAGGACCCTTGCTGACTACAACATC 17221 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTT 206379 ||||| ||||| || |||||||||||| Sbjct 17222 CAGAAGGAGTCCACCCTTCACCTTGTT 17248 >seq5881 Length=10397 Score = 100 bits (110), Expect = 7e-16 Identities = 133/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || || || ||||||||||| || || || |||||||| | || || ||| Sbjct 10353 ACTGGGAAGACCATCACTTTGGAGGTTGAGAGCTCTGACACCATTGATAATGTGAAGGCC 10294 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| || || || || || ||| || ||| || | || |||||||| || ||| Sbjct 10293 AAGATCCAGGACAAGGAGGGGATTCCCCCAGACCAGCAGCGTCTGATCTTCGCTGGCAAG 10234 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| |||| |||||| | || | ||||| |||||| ||||||| ||||| || || ||| Sbjct 10233 CAGCTGGAGGATGGACGCACCCTCGCCGACTACAACATCCAGAAGGAGTCCACCCTCCAC 10174 Query 206374 CTTGT 206378 || || Sbjct 10173 CTGGT 10169 >seq11087 Length=17449 Score = 89.7 bits (98), Expect = 1e-12 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || ||||| |||| ||||| || ||||| |||| Sbjct 11765 AAGACCCTGACGGGGAAGACCATCACGCTGGAGGTGGAGTCCTCGGACACCATCGACAAC 11824 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || ||||| || |||||| || | || |||||| Sbjct 11825 GTGAAGGCCAAGATCCAGGACAAGGAAGGGATCCCCCCGGACCAGCAGCGCCTCATCTTC 11884 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| | || ||||| | || | ||||| |||||| ||||||| ||||| Sbjct 11885 GCCGGCAAGCAGCTCGAGGATGGCCGCACCCTCGCCGACTACAACATCCAGAAGGAGTCC 11944 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 11945 ACCCTCCACCTCGT 11958 >seq7832 Length=9206 Score = 89.7 bits (98), Expect = 1e-12 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| || || || |||||| |||| || || |||||||| |||| Sbjct 45 AAGACCCTCACTGGCAAGACCATCACTCTGGAGGTTGAGTCCTCTGACACCATCGACAAC 104 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || || || || ||| || | || |||||| Sbjct 105 GTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCCTCATCTTC 164 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| | || ||||| | || | ||||| || ||| ||||||| ||||| Sbjct 165 GCCGGCAAGCAGCTCGAGGATGGCCGCACCCTTGCCGACTATAACATCCAGAAGGAGTCC 224 Query 206365 ACTCTTCACCTTGT 206378 || || |||||||| Sbjct 225 ACCCTGCACCTTGT 238 >seq2330 Length=21218 Score = 89.7 bits (98), Expect = 1e-12 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || |||||||| |||| ||||| || ||||| |||| Sbjct 4421 AAGACCCTGACGGGGAAGACGATCACGCTGGAGGTGGAGTCCTCGGACACCATCGACAAC 4362 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || || || ||| ||| || | || |||||| Sbjct 4361 GTGAAGGCGAAGATCCAGGACAAGGAGGGGATCCCGCCCGACCAGCAGCGGCTCATCTTC 4302 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||| || || | || | ||||| |||||| ||||||| ||||| Sbjct 4301 GCCGGCAAGCAGCTGGAGGACGGGCGCACCCTCGCCGACTACAACATCCAGAAGGAGTCG 4242 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 4241 ACCCTCCACCTGGT 4228 >seq7833 Length=8852 Score = 87.8 bits (96), Expect = 4e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 |||||||| || || ||||| || || || ||||| ||||| || || || || Sbjct 8401 CAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTTGAGTCCTCCGAT 8460 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| |||||||| || || || || || || ||| ||| Sbjct 8461 ACGATTGACAATGTGAAGGCTAAGATTCAGGACAAGGAGGGCATCCCTCCAGACCAGCAA 8520 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | ||||||||||| || |||||| | || ||||| | ||| | || ||||| ||| || Sbjct 8521 CGCCTTATCTTCGCTGGCAAGCAGCTTGAGGATGGGCGTACTCTCGCGGATTATAACATC 8580 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| || | |||||||| Sbjct 8581 CAGAAGGAGTCCACCTTGCACCTTGT 8606 >seq6022 Length=17457517 Score = 86.0 bits (94), Expect = 1e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 || ||||| || || ||||| ||||||| || |||||||||| || | ||| || ||| Sbjct 6547297 ACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGTCCGTCCTCC 6547356 Query 204824 AGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 |||||||| ||||||||||| ||||| || || Sbjct 6547357 AGCTGCTTCCCGGCGAAGATCAGCCGCTGCTG 6547388 Score = 84.2 bits (92), Expect = 5e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 206280 GCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGC 206339 ||||||| || | || ||||||||||| |||||| |||| ||||| | || |||| Sbjct 7780044 GCCGGACCAGCAGCGCCTCATCTTCGCCGGGAAGCAGCTGGAGGATGGCCGCACGCTGGC 7780103 Query 206340 CGATTACAACGTCCAGAAAGAGTCTACTCTTCACCTTGT 206378 ||| |||||| ||||||| ||||| || |||||||| || Sbjct 7780104 CGACTACAACATCCAGAAGGAGTCCACGCTTCACCTGGT 7780142 >seq10866 Length=43988 Score = 84.2 bits (92), Expect = 5e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || || || ||||| || || || | || || || |||||| Sbjct 18831 CAGATTTTTGTCAAGACCCTGACCGGAAAGACCATTACGCTTGAGGTCGAGTCTTCTGAT 18772 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| |||| || ||| |||||||| || || || || || | |||| || Sbjct 18771 ACAATCGACAATGTGAAGGCGAAGATTCAGGACAAGGAGGGCATCCCCCGGGACCAGCAG 18712 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | ||||||||||| |||||| | || || ||| | | |||| || ||||| || Sbjct 18711 CGCTTCATCTTCGCCGGCAAGCAGCTCGAGGACGGACGCTCCCTGGCTGACTACAATATC 18652 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 || || |||||||| |||||||| || Sbjct 18651 CACAAGGAGTCTACCCTTCACCTAGT 18626 >seq1402 Length=13741 Score = 84.2 bits (92), Expect = 5e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || ||||| |||| ||||| || ||||| || | Sbjct 4393 AAGACCCTGACGGGGAAGACCATCACGCTGGAGGTGGAGAGCAGCGACACGATCCAGAAC 4452 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||| | || || || || || || ||||||| || | || |||||| Sbjct 4453 GTCAAGGCGAAGGTGCAGGACAAGGAGGGGATCCCGCCGGACCAGCAGCGGCTCATCTTC 4512 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||| || || | || ||||||| |||||| ||||||| ||||| Sbjct 4513 GCCGGCAAGCAGCTGGAGGACGGGCGCACGCTGGCCGACTACAACATCCAGAAGGAGTCG 4572 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 4573 ACGCTGCACCTGGT 4586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181433177919679