Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glaberrima_20[genbank_20GCA_5F000147395.2_202010-09-22] 25,599 sequences; 303,294,962 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq17240 105 6e-18 seq10092 104 2e-17 seq17239 91.5 1e-13 seq10866 86.0 5e-12 >seq17240 Length=28509 Score = 105 bits (116), Expect = 6e-18 Identities = 149/206 (72%), Gaps = 10/206 (5%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || ||||| ||||| |||||||| | |||||| | || |||||||| |||||| Sbjct 21446 GTGGACTCTTTCTGAATTTTGTAGTCAGCAAGGTTGCGTCCTTCCTCGAGCTGCTTACCG 21505 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||| ||||| || ||||| || | ||||| || || |||||| ||| Sbjct 21506 GCGAAGATGAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTTACCTTC 21565 Query 27171 AGGGTTTCTACAGTGTC-----TGT-GGCT---TCAACTTCTAGAGTTATAGATTTGCCC 27221 | | ||| ||| |||| ||| || | || || || || || || || ||||| Sbjct 21566 ACTGCTTC-ACATTGTCGATGGTGTCGGATGACTCCACCTCGAGGGTGATGGACTTGCCG 21624 Query 27222 GTCAGAGTTTTCACAAAGATTTGCAT 27247 |||||||| ||||||||||| ||||| Sbjct 21625 GTCAGAGTCTTCACAAAGATCTGCAT 21650 >seq10092 Length=22630 Score = 104 bits (114), Expect = 2e-17 Identities = 172/246 (70%), Gaps = 3/246 (1%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 ||||||| || | || | || | ||| | || || || || || || |||||||| Sbjct 17040 TGCCTCCCCGGAGGCGGAGGACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAG 16981 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | ||||| | ||||||||||| || || ||| | ||||||||||| || ||||| | Sbjct 16980 CAAGCGTGCGCCCATCTTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGTG 16921 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | ||||| || || ||||||| || | | || | || || | || |||| Sbjct 16920 GGATTCCCTCCTTGTCCTGGATCTTGGCCTTTACATTGTCAATGGTATCCGAGGACTCAA 16861 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGCTAAAA 27258 | || || ||||| | ||||| || ||||| ||||||||||| ||||| |||| || | Sbjct 16860 CCTCAAGGGTTATGGTCTTGCCAGTGAGAGTCTTCACAAAGATCTGCAT--CTGC-AAGA 16804 Query 27259 ATTTAT 27264 || ||| Sbjct 16803 ATGTAT 16798 >seq17239 Length=15006 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/197 (71%), Gaps = 1/197 (1%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || ||||| |||||||| | | |||| | || |||||||| || ||| Sbjct 3582 GTCGACTCCTTCTGAATGTTGTAGTCAGCAAGGGTGCGTCCTTCCTCGAGCTGCTTGCCG 3641 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | || || ||||| || ||||| || | ||||| ||||| |||||| ||| Sbjct 3642 GCAAAGATAAG-CGCTGCTGGTCCGGGGGAATGCCCTCCTTATCCTGGATCTTCGCCTTC 3700 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||||| | | || || || || || || || ||||| ||||| ||| Sbjct 3701 ACATTGTCGATTGTGTCGGATGACTCCACCTCAAGGGTGATGGACTTGCCGGTCAGGGTT 3760 Query 27231 TTCACAAAGATTTGCAT 27247 ||||||||||| ||||| Sbjct 3761 TTCACAAAGATCTGCAT 3777 >seq10866 Length=43988 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 27020 GCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GC 27078 ||| ||||| | || | |||| || || || || || || || || ||||| || || Sbjct 18379 GCCACCGCGGAGACGGAGCACCAGGTGCAAGGTGGACTCCTTCTGGATGTTGTAATCTGC 18438 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | | || ||| | || |||||||| || || || | || || ||||| |||||||| | Sbjct 18439 TAAGGT-GCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGATCCGGGG 18497 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | | ||| || || ||||| ||| | | | || | ||||||| | |||| Sbjct 18498 GAATGCTCTCCTTGTCCTGAATCTTTGCTTTTACGTTGTCAATTGTGTCTGACGACTCAA 18557 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || || || | |||||| |||| || || |||||||||||||| Sbjct 18558 CCTCCAGGGTAATGGTTTTGCCGGTCAATGTCTTGACAAAGATTTGCAT 18606 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424801825646088