Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glaberrima_20[genbank_20GCA_5F000147395.2_202010-09-22] 25,599 sequences; 303,294,962 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq13224 123 3e-23 seq12822 114 2e-20 seq11955 114 2e-20 seq11868 109 7e-19 >seq13224 Length=26385 Score = 123 bits (136), Expect = 3e-23 Identities = 307/454 (68%), Gaps = 14/454 (3%) Strand=Plus/Minus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 ||||| ||||| |||||||| |||||||||||||| || | ||| ||| ||||| Sbjct 16447 TAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCATC 16388 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAATGGG-TGGCACCCCAACTTGTTTGAGGAGACG 122489 |||| || || || |||| | || | |||||| | | | ||| || || Sbjct 16387 CAGTCGAACGGGTTGGCGACGTTGTACATCTTCTTGCACCCGAGCGCCAT-GAGCAGCCG 16329 Query 122490 ATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAG-GTTAC 122548 || | || |||| ||||||| | ||| ||| |||||| |||| ||| | || Sbjct 16328 GTCGGCGACGAACTCGATGTACTGGCTCATGAGCTCGCCGTTCATCCCGACGAGCGCGAC 16269 Query 122549 ATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGT 122608 ||||| ||||| ||| |||| | |||| || || || || || ||||| | | Sbjct 16268 G-GGGAGCGCGTCGCAGACGAACTCCCTCTCGATGTCCACGGCGTCGGCGACGATCTCCT 16210 Query 122609 GGATAGTTTCGGTAGTGGGTCTATTACGCAAAG----TCTT-GAAGAGCTCCACGGCAAA 122663 ||| | | | || | || | ||| || || | || ||| || ||| || Sbjct 16209 GGAC-GCGTGACTCGTCGAGCT-TGCCGCGGAGGAGGTCGTAGAGGAGG--CA-GGCGAA 16155 Query 122664 CTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCAT 122723 || |||||||||||| || ||||| || || || || |||||| || || ||||| Sbjct 16154 GTCGCAGTGGAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCAT 16095 Query 122724 GAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTC 122783 ||| || |||||||| | ||| | || ||||||||||| || ||||||||||| ||||| Sbjct 16094 GAGTCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAATGAACCCGAGAAGAAGATCCCCTC 16035 Query 122784 CACACACGCAAACGCAAAAAGGCGTTCGGCGAAG 122817 || || || || || | || || ||||||||| Sbjct 16034 GACGCAGGCGAAGGCGACGAGCCGCTCGGCGAAG 16001 >seq12822 Length=10151 Score = 114 bits (126), Expect = 2e-20 Identities = 114/148 (77%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 ||| || ||||| || ||||| || || || || |||||| || || |||||||| || Sbjct 2417 GTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGCCC 2476 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 ||||||||| | ||| | || |||||||| || || ||||||||||| ||||| || || Sbjct 2477 CCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATCCCCTCGACGCA 2536 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAG 122817 || || || | ||||| ||||||||| Sbjct 2537 GGCGAAGGCGACGAGGCGCTCGGCGAAG 2564 >seq11955 Length=56487 Score = 114 bits (126), Expect = 2e-20 Identities = 198/287 (69%), Gaps = 12/287 (4%) Strand=Plus/Plus Query 11453 TCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGCA 11512 |||||||| || || | || | || ||| |||||||| | | || ||||| ||| Sbjct 22787 TCAAAACGTCCAGGTCTGAGTAAAGCAGAATCCAGGATATCAGCCCTGTTGGTGGCAGCA 22846 Query 11513 ATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTAATT 11572 ||||| | || ||||| | ||||| ||||||||||| || || || ||||| | Sbjct 22847 ATAACAATGATTCCAGTGTTCCCCTCAAAACCATCCATCTCAGTCAGCAACTGATTCAAA 22906 Query 11573 GTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAGCA-CTG-----CGTTGCTTGCCC 11626 || || || || ||||||||| | ||||||| | ||| | |||| | || Sbjct 22907 GTCTGCTCCCTTTCATCATTTCC------ACCACCAATACCTGTCCCTCTTTGCCTCCCA 22960 Query 11627 ACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 11686 || |||||||| ||||||| || || || || || ||| || || | | ||| Sbjct 22961 ACAGCATCAATTTCATCAACAAATACTATGCAAGGAGCATTCTCCTTTGCCTTCTTGAAG 23020 Query 11687 AGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAA 11733 ||||| ||||||| |||||| || || ||||||||||||||||| Sbjct 23021 AGATCACGAACCCGGGAGGCACCAACTCCGACAAACATCTCCACAAA 23067 >seq11868 Length=22862 Score = 109 bits (120), Expect = 7e-19 Identities = 216/318 (68%), Gaps = 4/318 (1%) Strand=Plus/Plus Query 11538 CAAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTG 11597 |||| ||||||||||| || | | || ||||| || || || |||||||||||| | Sbjct 17755 CAAATCCATCCATCTCAGTCAAGAGCTGGTTAATGGTCTGCTCCCTCTCATCATTTCCC- 17813 Query 11598 GCATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAAT 11655 | | | | ||||||| || ||| | || || |||||||| |||||||||||||| || Sbjct 17814 -CCTCCGAGCCCAGCACCACGCTGCCTCCCGACGGCATCAATTTCATCAATGAAGACGAT 17872 Query 11656 ACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACC 11715 || || || | ||| | || || || || | ||||| |||||| ||||| Sbjct 17873 GCAAGGGGCCTTGGCCTTGGCCTTCTCGAACAGGTCCCTGACCCTGGAGGCACCGACACC 17932 Query 11716 AACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACC 11775 || |||| ||| || || | | || | ||| || |||||| || | || || Sbjct 17933 GACGAACAGCTCAACGAACTCGGACGCGGCGCAGGAGAAGAATGGCACTCCGGCCTCCCC 17992 Query 11776 CGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCC 11835 |||| ||| || || || || ||||| || || || ||| || |||| ||| || Sbjct 17993 GGCGACGGCACGCGCCAGCAGTGTCTTCCCGGTTCCGGGCGGGCCGACGAGCAGGCATCC 18052 Query 11836 TCGGGGGATCTTGGCACC 11853 |||||||||||| || Sbjct 18053 CTTGGGGATCTTGGCCCC 18070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627831037610400