Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glaberrima_20[genbank_20GCA_5F000147395.2_202010-09-22] 25,599 sequences; 303,294,962 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq13224 185 1e-41 seq12822 161 1e-34 seq11868 127 3e-24 seq11955 82.4 9e-11 >seq13224 Length=26385 Score = 185 bits (204), Expect = 1e-41 Identities = 322/457 (70%), Gaps = 20/457 (4%) Strand=Plus/Minus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 ||||| || || ||||||||||||||||| ||||| || | || | ||| |||||| Sbjct 16447 TAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCATC 16388 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAAT-TGCTGGCACTCCAATCTGTTTGAGGAGACG 129846 | || || ||||| ||| | || | || |||| || | | |||| || || Sbjct 16387 CAGTCGAACGGGTTGGCGACGTTGTACATCTTCTTGCAC-CCGAGCGCCATGAGCAGCCG 16329 Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAG-GTTAC 129905 || | |||| |||| ||||||| ||| |||| |||||| |||| ||| | || Sbjct 16328 GTCGGCGACGAACTCGATGTACTGGCTCATGAGCTCGCCGTTCATCCCGACGAGCGCGAC 16269 Query 129906 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGT 129965 ||||||||||| ||| |||| || |||| |||||||| || || ||||| | | Sbjct 16268 G-GGGAGCGCGTCGCAGACGAACTCCCTCTCGATGTCCACGGCGTCGGCGACGATCTCCT 16210 Query 129966 GAATGGTCTCCGTGCCAGGTCTA--TTGC---GCA--AAGTCTT-GAAGAGTTCCACGGC 130017 | | | |||| | ||| | |||| | | | ||| | || ||| || ||| Sbjct 16209 GGACG-----CGTGACTCGTCGAGCTTGCCGCGGAGGAGGTCGTAGAGGAGG--CA-GGC 16158 Query 130018 AAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGG 130077 || || ||||||||||||||| ||||||||||| || || |||||| || || || Sbjct 16157 GAAGTCGCAGTGGAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGG 16098 Query 130078 CATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCC 130137 |||||| || |||||||| | |||||| || || || ||||| || |||||||||||||| Sbjct 16097 CATGAGTCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAATGAACCCGAGAAGAAGATCCC 16038 Query 130138 CTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAG 130174 ||| || || ||||| || | ||| ||||| || ||| Sbjct 16037 CTCGACGCAGGCGAAGGCGACGAGCCGCTCGGCGAAG 16001 >seq12822 Length=10151 Score = 161 bits (178), Expect = 1e-34 Identities = 313/452 (69%), Gaps = 10/452 (2%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 ||||| || || ||||||||||||||||| ||||| || | || | ||| |||||| Sbjct 2118 TAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCATC 2177 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAAT-TGCTGGCACTCCAATCTGTTTGAGGAGACG 129846 | || || ||||| ||| | || | || ||| | | | | |||||| || Sbjct 2178 CAGTCGAAGGGGTTGGCGACGTTGTACATCTTCTTGCAGCCGAGTGCCAT-GAGGAGGCG 2236 Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAG-GTTAC 129905 || | |||| | || ||||||| ||| ||| |||||| |||| ||| | || Sbjct 2237 GTCGGCGACGAATTCGATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGCGCGAC 2296 Query 129906 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGT 129965 ||||||||||| ||| |||| || |||| ||||| || || || ||||| || Sbjct 2297 G-GGGAGCGCGTCGCAGACGAACTCCCTCTCGATGTCGACGGCGTCGGCGACGATCTCGC 2355 Query 129966 GAATGGTCTCCGTGCCAGGTCTATTGCGCA--AAGTCTT-GAAGAGTTCCACGGCAAACT 130022 | | | | || | | | | ||| | | ||| | || ||| || ||| || | Sbjct 2356 GGACGCGCGCCTCGTCGAGCTTGCCGCGGAGGAGGTCGTAGAGGAGG--CA-GGCGAAGT 2412 Query 130023 CCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGA 130082 | ||| || |||||||| ||||||||||| || || |||||| || || ||||||| Sbjct 2413 CGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGA 2472 Query 130083 GACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCA 130142 | ||||||||||| | |||||| || || || || ||||| ||||||||||||||||| | Sbjct 2473 GCCCCCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATCCCCTCGA 2532 Query 130143 CACACGCGAACGCAAAGAGACGCTCAGCAAAG 130174 | || ||||| || | ||| ||||| || ||| Sbjct 2533 CGCAGGCGAAGGCGACGAGGCGCTCGGCGAAG 2564 >seq11868 Length=22862 Score = 127 bits (140), Expect = 3e-24 Identities = 282/418 (67%), Gaps = 4/418 (1%) Strand=Plus/Plus Query 14051 ACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATG 14110 ||||||| || ||||| || | || ||||| || || || |||| || | |||| Sbjct 17655 ACGGTGACCTGCCGATCGAACCTCCCAGGGCGAAGAAGCGCCGCGTCGAGCACATCAGGC 17714 Query 14111 CGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTC 14170 | ||| ||||| |||| |||| || || | | | |||| ||||||||||||||| Sbjct 17715 CTGTTTGTCGCGGCGAGCACAATGACACCGCTATTGCCGGCAAATCCATCCATCTCAGTC 17774 Query 14171 AAGAGTTGATTGATGGTTTGTTCGCGTTCATCA-TTCGCAGGCATACCACCCGCACTGCG 14229 ||||| || || ||||| || || | |||||| ||| | | | | || |||| || Sbjct 17775 AAGAGCTGGTTAATGGTCTGCTCCCTCTCATCATTTCCCCCTCCGAGC-CCAGCACCACG 17833 Query 14230 TTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGC 14289 ||| | |||||||| ||||||||||| ||||| ||||| || || || | ||| Sbjct 17834 CTGCCTCCCGACGGCATCAATTTCATCAATGAAGACGATGCAAGGGGCCTTGGCCTTGGC 17893 Query 14290 AACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATT 14349 || || | || | || || |||||||||||| || |||| ||| || || | Sbjct 17894 CTTCTCGAACAGGTCCCTGACCCTGGAGGCACCGACACCGACGAACAGCTCAACGAACTC 17953 Query 14350 GGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAG 14409 || |||| || || ||| || || | || || |||| ||| || || || || Sbjct 17954 GGACGCGGCGCAGGAGAAGAATGGCACTCCGGCCTCCCCGGCGACGGCACGCGCCAGCAG 18013 Query 14410 GGTCTTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCACGT-GGGATCCTGGCACC 14466 |||||||| || || || || |||| | |||| | | | |||||| |||| || Sbjct 18014 TGTCTTCCCGGTTCCGGGCGGGCCGACGAGCA-GGCATCCCTTGGGGATCTTGGCCCC 18070 >seq11955 Length=56487 Score = 82.4 bits (90), Expect = 9e-11 Identities = 171/253 (68%), Gaps = 4/253 (2%) Strand=Plus/Plus Query 14096 TCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAG 14155 || ||||||||| | ||| || || || || |||| ||| || || | ||||| Sbjct 22817 TCCAGGATATCAGCCCTGTTGGTGGCAGCAATAACAATGATTCCAGTGTTCCCCTCAAAA 22876 Query 14156 CCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGCATA 14215 |||||||||||||||| | ||||| | || || || | ||||||||| || | Sbjct 22877 CCATCCATCTCAGTCAGCAACTGATTCAAAGTCTGCTCCCTTTCATCATTTCCACCACCA 22936 Query 14216 CCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGT 14275 ||| | | | |||| | || || || ||||||||||| | || || || || || Sbjct 22937 ATACCTGTCCCTCTTTGCCTCCCAACAGCATCAATTTCATCAACAAATACTATGCAAGGA 22996 Query 14276 TGATTTTCACGGGCAACTTC--AAAGATATCTCGCACTCTCTTGGCACCGACACCCACAA 14333 ||| || || |||| |||| ||| || || | |||||| || || |||| Sbjct 22997 GCATTCTCCTTTGC--CTTCTTGAAGAGATCACGAACCCGGGAGGCACCAACTCCGACAA 23054 Query 14334 ACATCTCCACAAA 14346 ||||||||||||| Sbjct 23055 ACATCTCCACAAA 23067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618237308466440