Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glaberrima_20[genbank_20GCA_5F000147395.2_202010-09-22] 25,599 sequences; 303,294,962 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq13224 150 2e-31 seq12822 145 9e-30 seq11868 113 5e-20 seq11955 102 1e-16 >seq13224 Length=26385 Score = 150 bits (166), Expect = 2e-31 Identities = 122/148 (82%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 94797 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 94856 ||| || ||||| ||| |||| || || || || ||||| ||||||||||| ||||| || Sbjct 16001 CTTCGCCGAGCGGCTCGTCGCCTTCGCCTGCGTCGAGGGGATCTTCTTCTCGGGTTCATT 16060 Query 94857 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 94916 |||||| || | |||||||||||||| || |||||||| || ||| |||||||||||| Sbjct 16061 CTGCGCCATCTTCTGGCTCAAGAAGCGCGGACTCATGCCGGGCCTCACCTTCTCCAACGA 16120 Query 94917 GCTTATCTCTCGTGACGAGGGACTCCAC 94944 ||| ||||| || |||||||| |||||| Sbjct 16121 GCTCATCTCCCGCGACGAGGGTCTCCAC 16148 >seq12822 Length=10151 Score = 145 bits (160), Expect = 9e-30 Identities = 121/148 (82%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 94797 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 94856 ||| || ||||| ||| |||| || || || || ||||| ||||||||||| || ||||| Sbjct 2564 CTTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGGATCTTCTTCTCGGGCTCCTT 2505 Query 94857 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 94916 |||||| || | |||||||||||||| || |||||||| || ||| |||||||||||| Sbjct 2504 CTGCGCCATCTTCTGGCTCAAGAAGCGGGGGCTCATGCCGGGCCTCACCTTCTCCAACGA 2445 Query 94917 GCTTATCTCTCGTGACGAGGGACTCCAC 94944 ||| ||||| || |||||||| || ||| Sbjct 2444 GCTCATCTCCCGCGACGAGGGCCTGCAC 2417 >seq11868 Length=22862 Score = 113 bits (124), Expect = 5e-20 Identities = 274/408 (67%), Gaps = 8/408 (2%) Strand=Plus/Plus Query 9524 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9583 ||||| || | || || ||||| ||||| | || || | |||| | || |||||| Sbjct 17667 CGATCGAACCTCCCAGGGCGAAGAAGCGCCGCGTCGAGCACATCAGGCCTGTTTGTCGCG 17726 Query 9584 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9643 |||| |||| | ||| | | |||| ||||||||||| ||||| || |||||| Sbjct 17727 GCGAGCACAATGACACCGCTATTGCCGGCAAATCCATCCATCTCAGTCAAGAGCTGGTTA 17786 Query 9644 ATAGTTTGTTCCCGTTCATCATT-CGCTGGCATACCACCAGCACTGCGTTGCTTTCCCAC 9702 || || || |||| |||||||| | | | | | ||||||| || ||| | || || Sbjct 17787 ATGGTCTGCTCCCTCTCATCATTTCCCCCTCCGAGC-CCAGCACCACGCTGCCTCCCGAC 17845 Query 9703 GGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACT--TCAAAG 9760 ||||||||| |||||||||||||||||||| || | || || | || || || Sbjct 17846 GGCATCAATTTCATCAATGAAGACGATGCAAGG--GGCCTTGGCCTTGGCCTTCTCGAAC 17903 Query 9761 AGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA 9820 || |||| || | ||| || ||||| || |||| ||| || || | | |||| Sbjct 17904 AGGTCCCTGACCCTGGAGGCACCGACACCGACGAACAGCTCAACGAACTCGGACGCGGCG 17963 Query 9821 CATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCC 9880 || || ||| || || | || || || | ||| || || || || ||||| || Sbjct 17964 CAGGAGAAGAATGGCACTCCGGCCTCCCCGGCGACGGCACGCGCCAGCAGTGTCTTCCCG 18023 Query 9881 GTACCTGGCTTACCCGCGAGGAGGGCACCTCGT-GGAATCTTGGCGCC 9927 || || ||| || |||| | |||| | | | || |||||||| || Sbjct 18024 GTTCCGGGCGGGCCGACGAGCA-GGCATCCCTTGGGGATCTTGGCCCC 18070 >seq11955 Length=56487 Score = 102 bits (112), Expect = 1e-16 Identities = 231/342 (68%), Gaps = 18/342 (5%) Strand=Plus/Plus Query 9556 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAA 9615 ||| ||||||||| | | || || || || || |||| || || || | ||||| Sbjct 22816 ATCCAGGATATCAGCCCTGTTGGTGGCAGCAATAACAATGATTCCAGTGTTCCCCTCAAA 22875 Query 9616 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 9675 |||||||||||| |||| | || || | ||| || |||| ||||||||| | Sbjct 22876 ACCATCCATCTCAGTCAGCAACTGATTCAAAGTCTGCTCCCTTTCATCATTTCC------ 22929 Query 9676 ACCACCAGCA-CTG-----CGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGAT 9729 ||||||| | ||| | |||| | || || |||||||| ||||||| || || || Sbjct 22930 ACCACCAATACCTGTCCCTCTTTGCCTCCCAACAGCATCAATTTCATCAACAAATACTAT 22989 Query 9730 GCATGGTTGATTTTCGCGAGCGACTTC--AAAGAGATCCCGTACACGCTTGGCGCCCACA 9787 ||| || ||| || || |||| |||||||| || || || ||| || || Sbjct 22990 GCAAGGAGCATTCTCCTTTGC--CTTCTTGAAGAGATCACGAACCCGGGAGGCACCAACT 23047 Query 9788 CCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTC 9846 || ||||||||||||||||| | | | | | || | || || || ||| || ||| Sbjct 23048 CCGACAAACATCTCCACAAACTCAGATCCTG-ATATCGAGAAAAACGGCACACCAGCTTC 23106 Query 9847 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888 || ||||| || ||| || | ||||||||| || || || Sbjct 23107 CCCTGCAATAGCCTTGGCAAGCAAAGTCTTACCAGTTCCAGG 23148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583074163834760