Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glaberrima_20[genbank_20GCA_5F000147395.2_202010-09-22] 25,599 sequences; 303,294,962 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq13224 190 2e-43 seq12822 187 3e-42 >seq13224 Length=26385 Score = 190 bits (210), Expect = 2e-43 Identities = 572/863 (66%), Gaps = 29/863 (3%) Strand=Plus/Plus Query 59572 GGTACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGG 59631 |||||||| | | |||| | || ||||| ||| | | || |||||| | | |||| Sbjct 15598 GGTACCCGCAGATCTGGGAGTTCTACAAGAAGGCGGTGGCGTCGTTCTGGACGGCGGAGG 15657 Query 59632 AGATTGACCTCGCCGGAGACCTGAAGGATTGGGACAA---GCTCAATTACGACGAGCAGC 59688 || | |||||| ||| ||| | | |||||| ||| |||||||| | Sbjct 15658 AGGTGGACCTCTCCGCCGACGCGCGCCACTGGGACGCCGCGCTGTCGCCCGACGAGCGCC 15717 Query 59689 ATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATA 59748 | ||| || || || |||||||||||||| ||||| || ||| | || || Sbjct 15718 ACTTCGTCTCCCACGTGCTCGCCTTCTTCGCGGCCTCCGATGGCATCGTGCTCGAGAACC 15777 Query 59749 TAGAC---ATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGT 59805 | | | | | | | ||| || || ||| | |||||||| || | ||||||| | Sbjct 15778 TCGCCTCCAGGTTCATGTCC---GACGTTCAGGTCGCCGAGGCTCGCGCCTTCTACGGCT 15834 Query 59806 ATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCGATAAGTTG 59864 ||| ||| || |||| |||||||| |||| ||||||||| || |||| | || Sbjct 15835 TCCAGATCGC-CATCGAGAACATCCACTCAGAGATGTACTCGCTTCTGCTCGAGACGTAC 15893 Query 59865 GTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACGTCCCCCGCAGTT 59924 || || | ||||||| | || ||||| ||||| || || |||||| || Sbjct 15894 ATCCGCGACGACGTCGAGAAGGACCGCCTCTTCCGCGCCATCGACACAGTCCCCGCCGTG 15953 Query 59925 AAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GAGTCCTG-GAGCATCATTTGCACAAC 59982 | || || || |||||||||| ||||| || | | |||| || || | | Sbjct 15954 CGCCGCAAGGCCGACTGGGCCATGCGATGGATCGACGGCGGCGAGCGC--TTCGCCGAGC 16011 Query 59983 GTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTT 60042 | ||| | || || || ||||| || || ||||||||||| || || ||||| || || | Sbjct 16012 GGCTCGTCGCCTTCGCCTGCGTCGAGGGGATCTTCTTCTCGGGTTCATTCTGCGCCATCT 16071 Query 60043 TCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCC 60102 |||||||||| ||||| || |||||||||||||| | |||||||||||||| || |||| Sbjct 16072 TCTGGCTCAAGAAGCGCGGACTCATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCC 16131 Query 60103 GGGACGAGGGCCTCCATCAGGAGTTTGCAGTGAC-GCTCTATTCACACCT-ATTGGAAAA 60160 | |||||||| ||||| || || || || | ||||| | ||| || || Sbjct 16132 GCGACGAGGGTCTCCACTGCGACTTCGC-CTGCCTCCTCTACGACCTCCTCCGCGGCAAG 16190 Query 60161 AT-GCCCTTCCAAGGATATTCACAAGATTGT-TCAGTGGGCTTGTGAAGTGGAGAGCGAG 60218 | | | || | | || |||| || | | | | || || | ||||| ||| Sbjct 16191 CTCGACGAGTCACG--CGTCCAGGAGATCGTCGCCGACGCCGTG-GACATCGAGAGGGAG 16247 Query 60219 TTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGGAGAAATGACGCAG 60278 ||| || || ||||| || | ||| | || ||| ||| | |||| ||| Sbjct 16248 TTCGTCTGCGACGCGCTCCCCGTCGCGCTCGTCGGGATGAACGGCGAGCTCATGAGCCAG 16307 Query 60279 TACATTCAGTTTGTCGCGGACCG---CCTCATGGCCCAGTTTGGAGAAGGACCAATTTAC 60335 ||||| |||| ||||| ||||| |||||||| | | || | | || || ||| Sbjct 16308 TACATCGAGTTCGTCGCCGACCGGCTGCTCATGGCGC--TCGGGTGCAAGA-AGATGTAC 16364 Query 60336 GGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACCAACTTC 60395 ||| ||||| ||||||||||||||| |||||| || | || |||||||||||| Sbjct 16365 AACGTCGCCAACCCGTTCGACTGGATGGAGCTCATCTCCCTGCAGGGCAAGACCAACTTC 16424 Query 60396 TTTGAGAAGCGGGTCGGGGATTA 60418 || |||||||| ||||| || || Sbjct 16425 TTCGAGAAGCGCGTCGGCGACTA 16447 >seq12822 Length=10151 Score = 187 bits (206), Expect = 3e-42 Identities = 587/892 (66%), Gaps = 33/892 (4%) Strand=Plus/Minus Query 59545 CCGCGCGTTTCACAACCTTTCCTATACGGTACCCGGATCTGTGGGCCCTGTATAAGAAAG 59604 ||| ||| ||| | | || || || |||||||| | | |||| | || ||||| | Sbjct 2994 CCGAGCGATTCTCGATGTTCCCGATCAGGTACCCGCAGATCTGGGAGTTCTACAAGAAGG 2935 Query 59605 CGATCGGTTCATTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGGG 59664 || | | || |||||| | | |||||| | |||||| ||| ||| | | |||| Sbjct 2934 CGGTGGCGTCGTTCTGGACGGCGGAGGAGGTGGACCTCTCCGCCGACGCGCGCCACTGGG 2875 Query 59665 ACAA---GCTCAATTACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGG 59721 || ||| |||||||| || |||||| || || ||||||||||| | Sbjct 2874 ACGCCGCGCTGTCCCCCGACGAGCGCCACTTCATCTCCCACGTGCTCGCCTTCTTCGCCG 2815 Query 59722 CGAGTGATGGAATTGTGATGGAAAATATAGAC---ATGAACTTTTCCAAGGATGTCCAGA 59778 | || || || ||| | || || | | | | | | | ||| || || ||| Sbjct 2814 CCTCCGACGGCATCGTGCTCGAGAACCTCGCCTCCAGGTTCATGTCC---GACGTGCAGG 2758 Query 59779 TTGCCGAGGCCCGGTCGTTCTACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAG 59837 | |||||||| || | ||||||| | ||| ||| || |||| |||||||||||| Sbjct 2757 TCGCCGAGGCGCGCGCCTTCTACGGATTCCAGATCGC-CATCGAGAACATCCACTCCGAG 2699 Query 59838 ACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTC 59897 | ||||||||| || |||| | | || || | ||||||| | |||||| Sbjct 2698 ATGTACTCGCTGCTGCTCGAGACCTACATCCGCGACGGCGCCGAGAAGGACCGGCTGTTC 2639 Query 59898 CGTGCCATAGAGACGTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT- 59956 || ||||| || || ||| || || | || || || |||||||||| ||||| Sbjct 2638 CGCGCCATCGACACCGTCCCGGCCGTGCGCCGCAAGGCCGACTGGGCCATGCGCTGGATC 2579 Query 59957 GAGTCCTG-GAGCATCATTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCT 60015 || | | |||| || || | || ||| | || || || ||||| || || |||| Sbjct 2578 GACGGCGGCGAGCGC--TTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGGATCT 2521 Query 60016 TCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCC 60075 ||||||| ||||| ||||| || || ||||||||||| ||||| || ||||||||||||| Sbjct 2520 TCTTCTCGGGCTCCTTCTGCGCCATCTTCTGGCTCAAGAAGCGGGGGCTCATGCCGGGCC 2461 Query 60076 TGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTGA 60135 | | |||||||||||||| || ||||| ||||||||||| || || || || || Sbjct 2460 TCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGCCTGCACTGCGACTTCGC-CTGC 2402 Query 60136 C-GCTCTATTCACACCTATTGGAAAAATGCCCTTCCA--AGGATATTCACAAGATTGT-T 60191 | ||||| | ||| | || || | | | | | | | |||| || Sbjct 2401 CTCCTCTACGACCTCCTCCGCGGCAA--GCTCGACGAGGCGCGCGTCCGCGAGATCGTCG 2344 Query 60192 CAGTGGGCTTGTGAAGTGGAGAGCGAGTTCATCACAGAAGCGCTTCCATGCAAACTCATA 60251 | | | | | || | ||||| |||||| || || ||||| || | ||| | Sbjct 2343 CCGACGCCGT-CGACATCGAGAGGGAGTTCGTCTGCGACGCGCTCCCCGTCGCGCTCGTC 2285 Query 60252 GGTATGGACGCTGGAGAAATGACGCAGTACATTCAGTTTGTCGCGGACCG---CCTCATG 60308 || ||| ||| | |||| |||||||| | || ||||| ||||| ||||||| Sbjct 2284 GGCATGAACGGCGACCTCATGAGCCAGTACATCGAATTCGTCGCCGACCGCCTCCTCATG 2225 Query 60309 G--CCCAGTTTGGAGAAGGACCAATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGA 60366 | | | | | ||||| || ||| ||| ||||| ||||||||||||||| Sbjct 2224 GCACTCGGCTGCAAGAAG-----ATGTACAACGTCGCCAACCCCTTCGACTGGATGGAGC 2170 Query 60367 CCATCTCGTTGGAAGGGAAGACCAACTTCTTTGAGAAGCGGGTCGGGGATTA 60418 |||||| || | || |||||||||||||| |||||||| ||||| || || Sbjct 2169 TCATCTCCCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGACTA 2118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548349278920560