Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glaberrima_20[genbank_20GCA_5F000147395.2_202010-09-22] 25,599 sequences; 303,294,962 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq13224 131 2e-25 seq12822 131 2e-25 seq3009 93.3 5e-14 seq15318 91.5 2e-13 seq23839 89.7 6e-13 seq20787 89.7 6e-13 seq6561 89.7 6e-13 seq897 89.7 6e-13 seq6852 86.0 7e-12 seq11094 82.4 8e-11 >seq13224 Length=26385 Score = 131 bits (144), Expect = 2e-25 Identities = 275/403 (68%), Gaps = 8/403 (2%) Strand=Plus/Minus Query 74805 AGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAG 74864 ||||| ||||| ||||| |||||||| | ||| |||||||| ||||| ||||| |||| Sbjct 16105 AGGCCCGGCATGAGTCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAATGAACCCGAGAAG 16046 Query 74865 AAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCG--GAAG 74922 ||||| || ||||| || || |||||||| || || | ||||| | || ||| | | Sbjct 16045 AAGATCCCCTCGACGCAGGCGAAGGCGACGAGCCGCTCGGCGAA--GCGC-TCGCCGCCG 15989 Query 74923 TC-ATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCT 74981 || ||||| | ||||| || || || || || || ||||| || ||||| || Sbjct 15988 TCGATCCATCGCATGGCCCAGTCGGCCTTGCGGCGCACGGCGGGGACTGTGTCGATGGCG 15929 Query 74982 TGGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTAC 75041 ||||||||| ||||||| || || || | | | || | || ||| |||||| Sbjct 15928 CGGAAGAGGCGGTCCTTCTCGACGTCGTCGCGGATGTACGTCTCGAGCAGAAGCGAGTAC 15869 Query 75042 GTCTCCGAATGAATCGACTCGTTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGC 75100 |||| || || || |||| || ||| |||| | ||||||| | || ||||| || Sbjct 15868 ATCTCTGAGTGGATGTTCTCGATGG-CGATCTGGAAGCCGTAGAAGGCGCGAGCCTCGGC 15810 Query 75101 AATCTGTACATCCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGC 75160 | ||| || || || | | ||| ||||| | |||||||| || ||||| Sbjct 15809 GACCTGAACGTCGGACATGAACCTGGAGGCGAGGTTCTCGAGCACGATGCCATCGGAGGC 15750 Query 75161 GGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCG 75203 ||||| || || || || || ||||||||||| ||| Sbjct 15749 CGCGAAGAAGGCGAGCACGTGGGAGACGAAGTGGCGCTCGTCG 15707 >seq12822 Length=10151 Score = 131 bits (144), Expect = 2e-25 Identities = 275/403 (68%), Gaps = 8/403 (2%) Strand=Plus/Plus Query 74805 AGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAG 74864 ||||| ||||| || || |||||||| | ||| |||||||| |||||||| || |||| Sbjct 2460 AGGCCCGGCATGAGCCCCCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAG 2519 Query 74865 AAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCG--GAAG 74922 ||||| || ||||| || || |||||||| ||||| | ||||| | || ||| | | Sbjct 2520 AAGATCCCCTCGACGCAGGCGAAGGCGACGAGGCGCTCGGCGAA--GCGC-TCGCCGCCG 2576 Query 74923 TC-ATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCT 74981 || ||||| | ||||| || || || || || || ||||| || ||||| || Sbjct 2577 TCGATCCAGCGCATGGCCCAGTCGGCCTTGCGGCGCACGGCCGGGACGGTGTCGATGGCG 2636 Query 74982 TGGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTAC 75041 |||| || | ||||||| || || || | | || | || || |||||| Sbjct 2637 CGGAACAGCCGGTCCTTCTCGGCGCCGTCGCGGATGTAGGTCTCGAGCAGCAGCGAGTAC 2696 Query 75042 GTCTCCGAATGAATCGACTCGTTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGC 75100 |||| || || || |||| || ||| |||| | ||||||| | |||||||| || Sbjct 2697 ATCTCGGAGTGGATGTTCTCGATGG-CGATCTGGAATCCGTAGAAGGCGCGCGCCTCGGC 2755 Query 75101 AATCTGTACATCCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGC 75160 | ||| || || || | | ||| ||||| | ||||||||||| ||||| Sbjct 2756 GACCTGCACGTCGGACATGAACCTGGAGGCGAGGTTCTCGAGCACGATGCCGTCGGAGGC 2815 Query 75161 GGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCG 75203 |||||| || || || || ||| ||||||||||| ||| Sbjct 2816 GGCGAAGAAGGCGAGCACGTGGGAGATGAAGTGGCGCTCGTCG 2858 >seq3009 Length=11628 Score = 93.3 bits (102), Expect = 5e-14 Identities = 67/76 (88%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 10585 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 10526 Query 79684 TGAGCTACGAAAGCAA 79699 |||||||||||||||| Sbjct 10525 TGAGCTACGAAAGCAA 10510 >seq15318 Length=32353 Score = 91.5 bits (100), Expect = 2e-13 Identities = 67/77 (87%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 29324 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 29265 Query 79684 TGAGCTACGAAAGCAAA 79700 |||||||||||||| || Sbjct 29264 TGAGCTACGAAAGCTAA 29248 >seq23839 Length=33146 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 28913 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 28972 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 28973 TGAGCTACGAAAGC 28986 >seq20787 Length=7799 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 5944 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 5885 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 5884 TGAGCTACGAAAGC 5871 >seq6561 Length=27670 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 1157 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 1216 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 1217 TGAGCTACGAAAGC 1230 >seq897 Length=22203 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 16905 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 16846 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 16845 TGAGCTACGAAAGC 16832 >seq6852 Length=27475 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || ||| ||||||||||||||||||||||||||| ||||| Sbjct 19969 TGCTTTCGTTGAGAGTCGAATTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 20028 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 20029 TGAGCTACGAAAGC 20042 >seq11094 Length=50614 Score = 82.4 bits (90), Expect = 8e-11 Identities = 65/77 (84%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||| ||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 39574 TGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 39633 Query 79684 TGAGCTACGAAAGCAAA 79700 |||||||||| ||| || Sbjct 39634 TGAGCTACGAGAGCTAA 39650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547040897720200