Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glaberrima_20[genbank_20GCA_5F000147395.2_202010-09-22] 25,599 sequences; 303,294,962 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq2330 100 2e-16 seq1402 95.1 8e-15 seq10092 93.3 3e-14 seq17239 91.5 9e-14 seq5881 91.5 9e-14 seq10866 89.7 3e-13 seq7833 89.7 3e-13 seq18466 87.8 1e-12 >seq2330 Length=21218 Score = 100 bits (110), Expect = 2e-16 Identities = 164/234 (70%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 34478 CGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG 34537 ||||||| | || || | ||||| ||||| || |||||| || ||||| || || | Sbjct 4208 CGCCGCCGCGGAGGCGGAGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGG 4267 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 || || ||| |||| || || || || ||||| || || | ||||| ||||| |||| Sbjct 4268 CGAGGGTGCGCCCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCGGGCG 4327 Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCC 34656 | | ||||||||||| |||| || | || ||| | || ||||| | |||| Sbjct 4328 GGATCCCCTCCTTGTCCTGGATC-TTCGCCTTCACGTTGTCGATGGTGTCCGAGGACTCC 4386 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 || |||| || ||||| || || || | || ||||| || |||||||| ||| Sbjct 4387 ACCTCCAGCGTGATCGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCATCTTG 4440 >seq1402 Length=13741 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 |||||| | || || | ||||| || || || |||||| || ||||| || || | Sbjct 4605 GCCGCCGCGGAGGCGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGC 4546 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || ||| |||| || || || || ||||| || || | ||||| ||||||||||| Sbjct 4545 CAGCGTGCGCCCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCCGGCGG 4486 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | ||||||||||| || | || | || ||| | || ||||| |||||||| Sbjct 4485 GATCCCCTCCTTGTC-CTGCACCTTCGCCTTGACGTTCTGGATCGTGTCGCTGCTCTCCA 4427 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | |||| || || || || || || | || ||||| || |||||||| Sbjct 4426 CCTCCAGCGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCAT 4378 >seq10092 Length=22630 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 34503 ATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTG 34562 |||||| ||| ||||| || ||||| || || | ||| || ||| | ||||| || || Sbjct 17015 ATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGCAAGCGTGCGCCCATCTTCGAGCTG 16956 Query 34563 TTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT 34622 || || || || || | |||||| |||||||| || | |||||||||||| |||||| Sbjct 16955 CTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGGATTCCCTCCTTGTCCTGGATCTT 16896 Query 34623 TTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682 |||| ||| || || | ||| || || | |||||| || || || || Sbjct 16895 GGCCTTTACATTGTCAATGGTATCCGAGGACTCAACCTCAAGGGTTATGGTCTTGCCAGT 16836 Query 34683 TAACGTTTTCACAAAAATCTGCAT 34706 | || |||||||| |||||||| Sbjct 16835 GAGAGTCTTCACAAAGATCTGCAT 16812 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || || || || | |||||| || || || |||||| |||||||| || || | | Sbjct 17721 CCACCCCTGAGGCGGAGCACCAAGTGTAGGGTAGACTCCTTCTGAATGTTGTAGTCGGCA 17662 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | || || || || ||||| || || || | | ||| |||||||| || Sbjct 17661 AGGGTGCGGCCATCCTCCAGCTGCTTACCAGCGAAGATGAGTCTCTGCTGGTCCGGGGGG 17602 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCAC 34658 | |||||||| || |||||| | || ||| | || |||||| |||||| || Sbjct 17601 ATGCCCTCCTTATCCTGGATCTTC-GCCTTCACGTTGTCGATGGTGTCTGAGCTCTCAAC 17543 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| ||| || || || || || | || || || ||||||||||| Sbjct 17542 CTCCAGGGTAATAGTCTTGCCAGTGAGAGTCTTGACGAAAATCTGCAT 17495 >seq17239 Length=15006 Score = 91.5 bits (100), Expect = 9e-14 Identities = 154/219 (70%), Gaps = 3/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | || | |||||| || |||||| |||||||| || || | ||| || || Sbjct 3561 AGACGGAGGACAAGATGGAGGGTCGACTCCTTCTGAATGTTGTAGTCAGCAAGGGTGCGT 3620 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || || |||||||| || || ||||| |||||||| || | |||||| Sbjct 3621 CCTTCCTCGAGCTGCTTGCCGGCAAAGAT-AAGCGCTGCTGGTCCGGGGGAATGCCCTCC 3679 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 || || |||||| | || || | |||||||| |||||| || | ||| Sbjct 3680 TTATCCTGGATCTTC-GCCTTCACATTGTCGATTGTGTCGGATGACTCCACCTCAAGGGT 3738 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | || ||||| | ||||||||||| |||||||| Sbjct 3739 GATGGACTTGCCGGTCAGGGTTTTCACAAAGATCTGCAT 3777 >seq5881 Length=10397 Score = 91.5 bits (100), Expect = 9e-14 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 || || | ||||| ||||| ||| |||||| || ||||| || || | || || || Sbjct 10160 AGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGT 10219 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || || || || || || | |||||| ||||| || || | |||||| Sbjct 10220 CCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCTGGGGGAATCCCCTCC 10279 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| || | || || || ||| ||||| |||||| || |||| || Sbjct 10280 TTGTCCTGGATC-TTGGCCTTCACATTATCAATGGTGTCAGAGCTCTCAACCTCCAAAGT 10338 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || || || ||||| || |||||||| Sbjct 10339 GATGGTCTTCCCAGTCAAGGTCTTCACGAAGATCTGCAT 10377 >seq10866 Length=43988 Score = 89.7 bits (98), Expect = 3e-13 Identities = 145/205 (71%), Gaps = 3/205 (1%) Strand=Plus/Plus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTG- 34562 || || ||| ||| || |||||||| ||||||| || || || |||| |||||||| Sbjct 18860 TGAAGGGTGGACTCTTTCTGAATGTTGTAATCTGCGAGGGTGCGTCCGTCCTCAAGTTGC 18919 Query 34563 TTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT 34622 ||| || ||||| || | ||||| ||||| || || | |||||||||||| ||| | Sbjct 18920 TTTGCCCGCAAAGATGAGGCGCTGCTGGTCAGGTGGAATTCCCTCCTTGTC-CTGAATCT 18978 Query 34623 TTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGG 34681 | | || || | ||| ||| | | ||| || || | |||||| || || || | Sbjct 18979 TGGCCTTGACATTGTCAATCGTGCCAGAGGACTCAACCTCTAGGGTTATGGTCTTGCCAG 19038 Query 34682 TTAACGTTTTCACAAAAATCTGCAT 34706 | | || |||||||| |||||||| Sbjct 19039 TGAGTGTCTTCACAAAGATCTGCAT 19063 >seq7833 Length=8852 Score = 89.7 bits (98), Expect = 3e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 34516 TCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAAT 34575 |||||||| ||||| || |||| ||| || || | || || || || || || ||||| Sbjct 8816 TCCTTTTGGATGTTGTAGTCTGCAAGGGTGCGGCCATCCTCGAGCTGCTTCCCAGCAAAG 8757 Query 34576 ATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT 34635 || | |||||| ||||| || || | |||||||||||| |||| || | || || | Sbjct 8756 ATGAGACGCTGCTGGTCTGGTGGGATTCCCTCCTTGTCCTGGATC-TTGGCCTTCACATT 8698 Query 34636 A-AAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCAC 34694 | || ||||| | ||| || |||| ||| || || || ||||| | || ||||| Sbjct 8697 ATCGATCGTGTCGGAGGACTCGACCTCCAGGGTAATGGTCTTGCCGGTGAGGGTCTTCAC 8638 Query 34695 AAAAATCTGCATG 34707 || || |||||| Sbjct 8637 GAATATTTGCATG 8625 >seq18466 Length=31617 Score = 87.8 bits (96), Expect = 1e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 ||||| || ||||| |||||| |||||||| || || | ||||| ||| | ||||| Sbjct 14432 ACCAAGTGAAGAGTTGACTCCTTCTGAATGTTGTAGTCGGCCAGTGTGCGCCCATCTTCC 14373 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTC 34613 || || || ||||| ||||| ||||||||||| || || || | || |||||||| Sbjct 14372 AGCTGCTTGCCGGCGAATATCAAACGCTGTTGATCTGGAGGGATCCCTTCCTTGTC 14317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314631408200567