Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glaberrima_20[genbank_20GCA_5F000147395.2_202010-09-22] 25,599 sequences; 303,294,962 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq17239 127 2e-24 seq10866 109 5e-19 seq10092 104 2e-17 seq2330 98.7 9e-16 seq17240 96.9 3e-15 seq18466 89.7 4e-13 >seq17239 Length=15006 Score = 127 bits (140), Expect = 2e-24 Identities = 168/229 (73%), Gaps = 3/229 (1%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| ||||| |||||||||||||| || || ||||| ||||| | ||| Sbjct 3777 ATGCAGATCTTTGTGAAAACCCTGACCGGCAAGTCCATCACCCTTGAGGTGGAGTCATCC 3718 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || || || || || || ||||| || || || || Sbjct 3717 GACACAATCGACAATGTGAAGGCGAAGATCCAGGATAAGGAGGGCATTCCCCCGGACCAG 3658 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCG-ACCGTTTCCGATTACAA 27166 ||||| || || | |||||||| || | || || || || ||| || | || ||||| Sbjct 3657 CAGCGCTT-ATCTTTGCCGGCAAGCAGCTCGAGGA-AGGACGCACCCTTGCTGACTACAA 3600 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 |||||| |||||||||||| | ||| | || | ||| | || |||||| Sbjct 3599 CATTCAGAAGGAGTCGACCCTCCATCTTGTCCTCCGTCTCCGTGGTGGC 3551 >seq10866 Length=43988 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || || |||||||||| | ||||| || || || || |||| Sbjct 18606 ATGCAAATCTTTGTCAAGACATTGACCGGCAAAACCATTACCCTGGAGGTTGAGTCGTCA 18547 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || ||| ||| ||||| ||||| || |||| || || ||||| Sbjct 18546 GACACAATTGACAACGTAAAAGCAAAGATTCAGGACAAGGAGAGCATTCCCCCGGATCAG 18487 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | || ||||| || | || || | ||| | | ||||||||| Sbjct 18486 CAGCGCCTGATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCTTAGCAGATTACAAC 18427 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 || || |||||||| ||||| || |||| | ||| | || |||||| Sbjct 18426 ATCCAGAAGGAGTCCACCTTGCACCTGGTGCTCCGTCTCCGCGGTGGC 18379 Score = 95.1 bits (104), Expect = 1e-14 Identities = 141/199 (71%), Gaps = 1/199 (1%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || || |||||| | || || || || || || | || Sbjct 19063 ATGCAGATCTTTGTGAAGACACTCACTGGCAAGACCATAACCCTAGAGGTTGAGTCCTCT 19004 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 | | ||||||| | ||||| || ||||| ||||| || || || ||||| || || Sbjct 19003 GGCACGATTGACAATGTCAAGGCCAAGATTCAGGACAAGGAGGGAATTCCACCTGACCAG 18944 Query 27108 CAGCGTTTAATATACGCCGGCAAA-CAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||| | || | || |||||| ||| | || ||| | ||| | | |||||||| Sbjct 18943 CAGCGCCTCATCTTTGCGGGCAAAGCAACTTGAGGACGGACGCACCCTCGCAGATTACAA 18884 Query 27167 CATTCAAAAGGAGTCGACC 27185 |||||| || ||||| ||| Sbjct 18883 CATTCAGAAAGAGTCCACC 18865 >seq10092 Length=22630 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||||| || |||||| | |||||||| || || || ||| Sbjct 17723 ATGCAGATCTTCGTCAAGACTCTCACTGGCAAGACCATTACTCTGGAGGTTGAGAGCTCC 17782 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || || || || || ||||| ||||| || || || || || Sbjct 17783 GATACCATCGACAATGTGAAGGCTAAGATCCAGGACAAGGAAGGTATTCCCCCAGACCAG 17842 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | ||||||||| || ||||||| | ||| | |||| |||||| Sbjct 17843 CAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGCCGTACCCTCGCCGACTACAAC 17902 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||| |||||||| ||| | || |||| | || | ||||||| Sbjct 17903 ATTCAGAAGGAGTCTACCCTCCACCTGGTGCTCCGCCTCAGGGGTGG 17949 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||||| || |||||| ||||||| || || || || || Sbjct 17495 ATGCAGATTTTCGTCAAGACTCTCACTGGCAAGACTATTACCCTGGAGGTTGAGAGCTCA 17554 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || || || || || || ||||| || || || || Sbjct 17555 GACACCATCGACAACGTGAAGGCGAAGATCCAGGATAAGGAGGGCATCCCCCCGGACCAG 17614 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | ||| || || || |||| || | ||| || |||| |||||| Sbjct 17615 CAGAGACTCATCTTCGCTGGTAAGCAGCTGGAGGATGGCCGCACCCTTGCCGACTACAAC 17674 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| |||||||| ||| |||| ||||| | || | ||||||| || Sbjct 17675 ATTCAGAAGGAGTCTACCCTACACTTGGTGCTCCGCCTCAGGGGTGGTAT 17724 >seq2330 Length=21218 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||| || ||| | || || || || ||||| | || Sbjct 4436 ATGCAGATCTTCGTGAAGACCCTGACGGGGAAGACGATCACGCTGGAGGTGGAGTCCTCG 4377 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || || || ||||| || || || || ||||| || Sbjct 4376 GACACCATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGGATCCCGCCCGACCAG 4317 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | ||||||||| || |||| ||| | ||| | |||| |||||| Sbjct 4316 CAGCGGCTCATCTTCGCCGGCAAGCAGCTGGAGGACGGGCGCACCCTCGCCGACTACAAC 4257 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGT 27196 || || |||||||||||| | || |||| Sbjct 4256 ATCCAGAAGGAGTCGACCCTCCACCTGGT 4228 >seq17240 Length=28509 Score = 96.9 bits (106), Expect = 3e-15 Identities = 164/236 (69%), Gaps = 10/236 (4%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || ||||||||||||||||| || || || || ||||| | ||| Sbjct 21650 ATGCAGATCTTTGTGAAGACTCTGACCGGCAAGTCCATCACCCTCGAGGTGGAGTCATCC 21591 Query 27048 GACTCGATTGAGATGGTCAAACA--------AAAAATTCAAGACAAAGAAGGCATACCAC 27099 ||| | || || | || || || ||| || || ||||| || ||||| || | Sbjct 21590 GACACCATCGACAATGTGAAGCAGTGAAGGTAAAGATCCAGGACAAGGAGGGCATTCCTC 21531 Query 27100 CCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCG-ACCGTTTCC 27158 | || || ||||| | || | |||||| || || | || || || || | | || | Sbjct 21530 CGGACCAGCAGCGCCTCATCTTCGCCGGTAAGCAGCTCGAGGA-AGGACGCAACCTTGCT 21472 Query 27159 GATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || ||||| ||||| || ||||| ||| | ||| | || | ||| | || || || Sbjct 21471 GACTACAAAATTCAGAAAGAGTCCACCCTCCATCTTGTCCTCCGTCTCCGTGGGGG 21416 >seq18466 Length=31617 Score = 89.7 bits (98), Expect = 4e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 27078 CAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTG 27137 || ||||| ||||| || || || |||||||||||||| |||| ||||||||| || || Sbjct 14314 CAGGACAAGGAAGGGATCCCTCCAGATCAACAGCGTTTGATATTCGCCGGCAAGCAGCTG 14373 Query 27138 GAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGT 27196 ||||| | || | |||| ||||||||||| |||||||| || | || ||||| Sbjct 14374 GAAGATGGGCGCACACTGGCCGACTACAACATTCAGAAGGAGTCAACTCTTCACTTGGT 14432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434779231548480