Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glaberrima_20[genbank_20GCA_5F000147395.2_202010-09-22] 25,599 sequences; 303,294,962 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq1402 104 2e-17 seq2330 102 7e-17 seq17239 95.1 1e-14 seq10092 95.1 1e-14 seq10866 89.7 4e-13 seq11087 87.8 2e-12 >seq1402 Length=13741 Score = 104 bits (114), Expect = 2e-17 Identities = 164/235 (70%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 39052 TTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAA 39111 |||| ||| || | | ||| | ||||| || ||||| ||| || || || || || Sbjct 4610 TTCAGGCCGCCGCGGAGGCGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAG 4551 Query 39112 TCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCG 39171 ||||| || || || |||| || ||||| ||||| || || || || ||||||||||| Sbjct 4550 TCGGCCAGCGTGCGCCCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCC 4491 Query 39172 GTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGAC 39231 | || | | ||| |||||| | ||| |||| || | ||| ||||| | Sbjct 4490 GGCGGGATCCCCTCCTTGTCCTGCACCTTCGCCTTGACGTTCTGGATCGTGTCGCTGCTC 4431 Query 39232 TCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 ||||| |||| |||||| | || |||||||| || || || ||||| ||||||| Sbjct 4430 TCCACCTCCAGCGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCATCT 4376 >seq2330 Length=21218 Score = 102 bits (112), Expect = 7e-17 Identities = 156/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||||| || || || ||| || || || || || ||||| || || || | Sbjct 4221 GCGGAGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGCCC 4280 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 ||| || ||||| ||||| || || || || ||||||||||||| || | | ||| || Sbjct 4281 GTCCTCCAGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCGGGCGGGATCCCCTCCTT 4340 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGA 39247 |||| ||| ||| || | ||| | | | || || |||||||| |||| ||||| Sbjct 4341 GTCCTGGATCTTCGCCTTCA-CGTTGTCGATGGTGTCCGAGGACTCCACCTCCAGCGTGA 4399 Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 | | || |||||||| || || || ||||| |||||||| Sbjct 4400 TCGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCATCTT 4439 >seq17239 Length=15006 Score = 95.1 bits (104), Expect = 1e-14 Identities = 138/194 (71%), Gaps = 1/194 (1%) Strand=Plus/Plus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||| || || || || || || ||||| || ||| | || || ||||| ||||| ||||| Sbjct 3587 CTCCTTCTGAATGTTGTAGTCAGCAAGGGTGCGTCCTTCCTCGAGCTGCTTGCCGGCAAA 3646 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 ||||| ||||||||||| | ||| | || ||| || ||| ||| ||| || | | Sbjct 3647 GATAAG-CGCTGCTGGTCCGGGGGAATGCCCTCCTTATCCTGGATCTTCGCCTTCACATT 3705 Query 39213 CGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAAC 39272 | | || ||| |||||||| || | ||||| || || ||||| ||||| || Sbjct 3706 GTCGATTGTGTCGGATGACTCCACCTCAAGGGTGATGGACTTGCCGGTCAGGGTTTTCAC 3765 Query 39273 AAAGATTTGCATCT 39286 |||||| ||||||| Sbjct 3766 AAAGATCTGCATCT 3779 >seq10092 Length=22630 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/228 (70%), Gaps = 3/228 (1%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||| |||| ||| | || | || || ||| ||| || || || || || || ||| Sbjct 17265 CCTCCCCTTAGGCGGAGAACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCA 17206 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || | | || || ||||| ||||| ||||| || |||||||||||||| | ||| Sbjct 17205 AGGGTCCTACCATCCTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCCG-GGGA 17147 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCAC 39236 | | ||| |||||| ||| || || | | ||| | | | ||||| ||||| || Sbjct 17146 ATCCCCTCCTTGTCCTGGATCTT-TGCCTTAACGTTGTCAATAGTATCAGAAGACTCAAC 17088 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || | |||||| | || || |||| || || |||||||||||||| Sbjct 17087 CTCAAGGGTGATAGTCTTGCCAGTCAAGGTCTTGACAAAGATTTGCAT 17040 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || || |||| ||| | || | || || ||| ||| || || || || || || || Sbjct 17493 CCACCCCTTAGGCGCAGAACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCG 17434 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || | | || || ||||| ||||| ||||| ||||||||||||||||| | ||| Sbjct 17433 AGGGTCCTGCCATCCTCCAGCTGCTTGCCGGCAAAAATAAGACGCTGCTGGTCTGGGGGA 17374 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCAC 39236 | || ||| |||||| ||| ||| || | ||| | | | ||| || ||||| || Sbjct 17373 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCA-CGTTGTCGATCGTGTCTGATGACTCAAC 17315 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || | ||| || | || || || || || || |||||||| ||||| Sbjct 17314 CTCAAGCGTAATGGTCTTGCCAGTAAGGGTCTTCACAAAGATCTGCAT 17267 >seq10866 Length=43988 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| || | ||| ||| || || || || ||||| || | || || | || || Sbjct 18397 CACCAGGTGCAAGGTGGACTCCTTCTGGATGTTGTAATCTGCTAAGGTGCGGCCATCCTC 18456 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| ||||| ||||| || || |||||||| || | ||| | |||||| |||||| | Sbjct 18457 GAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGATCCGGGGGAATGCTCTCCTTGTCC-T 18515 Query 39195 GATTTTCTGTTTGAGCGTCGCCACC-GTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 || | | || || ||| | || || || |||||| || |||| || || ||| Sbjct 18516 GAATCTTTGCTTTTACGTTGTCAATTGTGTCTGACGACTCAACCTCCAGGGTAATGGTTT 18575 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || |||| || || |||||||||||||| Sbjct 18576 TGCCGGTCAATGTCTTGACAAAGATTTGCAT 18606 Score = 87.8 bits (96), Expect = 2e-12 Identities = 165/239 (69%), Gaps = 3/239 (1%) Strand=Plus/Plus Query 39054 CAAGCCTCCTCTTAAGCGTAA-CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAAT 39112 || |||||| || | || ||| ||| | || || ||| |||||| || || || |||| Sbjct 18832 CATGCCTCCCCTCA-GCCTAAGCACAAGGTGAAGGGTGGACTCTTTCTGAATGTTGTAAT 18890 Query 39113 CGGCAAGTGTTCGTTCGTCATCAAGCTG-TTTGCCCGCAAATATAAGACGCTGCTGGTCG 39171 | || || || ||| |||| ||||| || |||||||||||| || || ||||||||||| Sbjct 18891 CTGCGAGGGTGCGTCCGTCCTCAAGTTGCTTTGCCCGCAAAGATGAGGCGCTGCTGGTCA 18950 Query 39172 GTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGAC 39231 | || | | ||| |||||| || || |||| | | | ||| | ||| Sbjct 18951 GGTGGAATTCCCTCCTTGTCCTGAATCTTGGCCTTGACATTGTCAATCGTGCCAGAGGAC 19010 Query 39232 TCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTAC 39290 || || || | || || | || || || || || || |||||||| ||||||| ||| Sbjct 19011 TCAACCTCTAGGGTTATGGTCTTGCCAGTGAGTGTCTTCACAAAGATCTGCATCTGTAC 19069 >seq11087 Length=17449 Score = 87.8 bits (96), Expect = 2e-12 Identities = 153/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||| | || || ||| ||| || || || || || ||||| || || || | Sbjct 11965 GCGGAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCC 11906 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 || || ||||| ||||| || || || || ||||||||||| | ||| | | || || Sbjct 11905 ATCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGGGGGATCCCTTCCTT 11846 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGA 39247 |||| ||| || || | ||| | | | || || |||||||| |||| ||||| Sbjct 11845 GTCCTGGATCTTGGCCTTCA-CGTTGTCGATGGTGTCCGAGGACTCCACCTCCAGCGTGA 11787 Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 | | || |||||||| || || || ||||| |||||||| Sbjct 11786 TGGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCATCTT 11747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429411587007887