Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glaberrima_20[genbank_20GCA_5F000147395.2_202010-09-22] 25,599 sequences; 303,294,962 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq10866 100 2e-16 seq18466 93.3 3e-14 >seq10866 Length=43988 Score = 100 bits (110), Expect = 2e-16 Identities = 144/199 (72%), Gaps = 3/199 (2%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || ||||| || || || || || || || ||||| ||| | Sbjct 19063 ATGCAGATCTTTGTGAAGACACTCACTGGCAAGACCATAACCCTAGAGGTTGAGTCCTCT 19004 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 | ||| |||| ||| | || | || | || ||||| || || | || || || || Sbjct 19003 GGCACGATTGACAATGTCAAGGCCAAGA-TTCAGGACAAGGAGGGAATTCCACCTGACCA 18945 Query 23730 ACAGCGTTTAATATTTGCCGGCAAA-CAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 ||||| | || ||||| |||||| ||||| || |||| |||||| | | ||||||| Sbjct 18944 GCAGCGCCTCATCTTTGCGGGCAAAGCAACTTGAGGACGGACGCACCCTCGCAGATTACA 18885 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| || ||||||||||| Sbjct 18884 ACATTCAGAAAGAGTCCAC 18866 Score = 98.7 bits (108), Expect = 7e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || || || || || | || || ||||| || || || || ||||| || | Sbjct 18607 AATGCAAATCTTTGTCAAGACATTGACCGGCAAAACCATTACCCTGGAGGTTGAGTCGTC 18548 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| | ||||| ||| ||| ||||| || | | || || ||||| Sbjct 18547 AGACACAATTGACAACGTAAAAGCAAAGATTCAGGACAAGGAGAGCATTCCCCCGGATCA 18488 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| | || ||||| ||||| || || || || | ||||| |||| |||||||| Sbjct 18487 GCAGCGCCTGATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCTTAGCAGATTACAA 18428 Query 23790 CATACAAAAAGAGTCCACATTACA 23813 ||| || || |||||||| || || Sbjct 18427 CATCCAGAAGGAGTCCACCTTGCA 18404 >seq18466 Length=31617 Score = 93.3 bits (102), Expect = 3e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 23704 GACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAA 23763 ||||| ||||| | || ||||||||||||||||| ||||| |||||||| || |||||| Sbjct 14317 GACAAGGAAGGGATCCCTCCAGATCAACAGCGTTTGATATTCGCCGGCAAGCAGCTGGAA 14376 Query 23764 GACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCAC 23807 || | ||||| | | ||| |||||||| || || ||||| || Sbjct 14377 GATGGGCGCACACTGGCCGACTACAACATTCAGAAGGAGTCAAC 14420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337904145124292