Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glaberrima_20[genbank_20GCA_5F000147395.2_202010-09-22] 25,599 sequences; 303,294,962 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq13116 105 1e-17 seq3701 86.0 9e-12 >seq13116 Length=53864 Score = 105 bits (116), Expect = 1e-17 Identities = 156/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 || || ||||| | ||| | |||||| | ||| |||| | | ||| |||| ||| || Sbjct 9220 CCACCTTGATCAACATAACGGGCAGTATCATTGAAAACACGTAGCATAGGAACAATCCCA 9279 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 || || || |||||||||||| ||||| || ||| || |||||||| || ||| Sbjct 9280 TTGGAGGTTCCATTTGTTCCACGGATATAGCTCCCAGTAGCTCGAATATTGTGAACTGAT 9339 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || |||||||| || ||| || | |||||| ||||| || |||||||| Sbjct 9340 ACACCAATTCCTCCAGCAGATTTGCTTATGACAGCACATTCCTTCAAAGTATCATAGATT 9399 Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCT 76974 ||||| || || ||||| ||||| | ||| |||||||| Sbjct 9400 CCCTCAATGCTGTCATCTTTCATGCAGATAAGGAAACAGCT 9440 >seq3701 Length=12561 Score = 86.0 bits (94), Expect = 9e-12 Identities = 156/226 (69%), Gaps = 8/226 (4%) Strand=Plus/Minus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 || || ||||| | ||| | ||||| | ||| |||| | || ||| |||| ||| || Sbjct 7889 CCGCCTTGATCAACATAACGTGCAGTATCATTGAAAACACGCAGCATGGGAACAATCCCA 7830 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 |||||||| ||||||||||| ||| ||||| ||| || | |||||| ||| || Sbjct 7829 TTAGATGTTCCATTTGTTCCTCGAATGTAACTCCCAGTAGCTCTAATATTGTGAATTGAG 7770 Query 76874 AGGCCTATTCCTCCTGC-CATTTTAGAGATTA---GAGCACAGCGTTTCAATGTGTCATA 76929 || || ||||| || || ||||| | ||| |||||| | | || ||||| Sbjct 7769 AGACCAATTCCACCAGCACATTT----GCTTATGGTAGCACATTCTGAGAGAGTATCATA 7714 Query 76930 GATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 || ||||| || |||||||| ||||| | || || |||||| Sbjct 7713 AATTCCCTCAATGCTATCATCTTTCATGCAGATGAGGAAGCAGCTA 7668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712706269903680