Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq9 86.0 6e-12 >seq9 Length=31548187 Score = 86.0 bits (94), Expect = 6e-12 Identities = 110/149 (74%), Gaps = 2/149 (1%) Strand=Plus/Minus Query 16199 AGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTT 16258 || || ||||||||||| || || || ||||| | | ||| || |||||||| || || Sbjct 1132701 AGGCAGGCGAAGTCGCAGTGGAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTG 1132642 Query 16259 AACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA-AATGACCCCGAAAA 16317 | || ||||| ||| || ||||| | |||||| || || ||| ||||| ||||| || Sbjct 1132641 AGGCCCGGCATGAGTCCGCGCTTCTTGAGCCAGAAGATGGC-GCAGAATGAACCCGAGAA 1132583 Query 16318 GAATATACCCTCAACAGATGCAAAAGCGA 16346 ||| || ||||| || | || || |||| Sbjct 1132582 GAAGATCCCCTCGACGCAGGCGAAGGCGA 1132554 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511414323287840