Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq9 425 6e-114 seq8 156 4e-33 seq1 154 2e-32 seq7 145 8e-30 seq11 125 7e-24 seq5 122 9e-23 seq12 116 4e-21 seq10 107 2e-18 seq6 105 7e-18 >seq9 Length=31548187 Score = 425 bits (470), Expect = 6e-114 Identities = 626/873 (72%), Gaps = 24/873 (3%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 |||||||||||| ||| || || ||| ||| ||||| || |||||| | Sbjct 1132085 GAGCCGCTGCTGGCGGAGTCGTCCGAGCGATTCTCGATGTTCCCGATCAGGTACCCGCAG 1132144 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || ||| | ||||| ||||| | ||||||||||||||| | |||||||||||||| Sbjct 1132145 ATCTGGGAGTTCTACAAGAAGGCGGTGGCGTCGTTCTGGACGGCGGAGGAGGTGGACCTC 1132204 Query 116696 TCCAAGGACACGAGCGACTGGGA----GCGCTTGAACGACAACGAGCGCCATTTCATCAA 116751 ||| ||| || || ||||||| ||||| | | |||||||||| ||| || Sbjct 1132205 TCCGCCGACGCGCGCCACTGGGATGCCGCGCT-GTCGTCCGACGAGCGCCACTTCGTCTC 1132263 Query 116752 GCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGG--TCGAG 116809 |||||||| ||||| ||||||||| |||||||||||| |||||| || | || || Sbjct 1132264 CCACGTGCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTGCTCGAGAACCTCGCCTCCAG 1132323 Query 116810 CGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCC 116869 ||| || | | |||||||| ||||||||||| |||||||||||| ||||||||| Sbjct 1132324 -GTTCATGTCCG-ACGTGCAGGTCGCCGAGGCGCGCGCCTTCTACGGCTTCCAGATCGCC 1132381 Query 116870 ATGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCG 116929 || |||||| | |||||||| ||||| ||| || |||| |||||| | ||| Sbjct 1132382 ATCGAGAACATCCACTCGGAGATGTACTCGCTTCTGCTCGAGACGTACATCCGCGACGAC 1132441 Query 116930 GAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGAT----GCCGTGCGTCAAAGAGAA 116985 | |||||| ||| | || ||||||||| || | |||||||| | | | Sbjct 1132442 GTCGAGAAGGACCGCCTCTTCCGCGCCATCGACACCGTCCCCGCCGTGCGCCGCA----A 1132497 Query 116986 GGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGT 117045 |||||| ||||| |||| ||||||| |||| | ||| ||| |||| ||||||||| || Sbjct 1132498 GGCCGACTGGGCCATGCGATGGATCGACGGCGGCGAG--CGC-TTCGCCGAGCGCCTCGT 1132554 Query 117046 GGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCT 117105 |||||||| ||||||||| ||||||| ||||| ||| |||||| || ||||| Sbjct 1132555 CGCCTTCGCCTGCGTCGAGGGGATCTTCTTCTCGGGTTCATTCTGCGCCATCTTCTGGCT 1132614 Query 117106 CAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGA 117165 |||||| ||||| |||||||| ||||| || ||| |||||||||||||||| | ||||| Sbjct 1132615 CAAGAAGCGCGGACTCATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGA 1132674 Query 117166 GGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAG-CG 117224 |||||| || |||||||| ||||| | || | | | | | || || | | | || Sbjct 1132675 GGGTCTCCACTGCGACTTCGCCTGCCTCCTCTACGA-CCTCCTCCGCGGCAAGCTCGACG 1132733 Query 117225 CGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCG 117284 | | |||||| |||||||||| ||||||| || | ||||||| | ||| || || Sbjct 1132734 AGTCACGCGTCCAGGAGATCGTCGCCGACGCCGTGGACATCGAGAGGGAGTTCGTCTGCG 1132793 Query 117285 AAGCGCTGCCGGT-GCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAG 117343 | ||||| || || ||| || | || | || |||| ||| || ||||||||| Sbjct 1132794 ACGCGCTCCCCGTCGCG-CTCGTCGGGATGAACGGCGAGCTCATGAGCCAGTACATCGAG 1132852 Query 117344 TTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAAC 117403 |||||||||||| ||||||| | | ||| | || ||| |||||| ||||| Sbjct 1132853 TTCGTCGCCGACCGGCTGCTCATGGCGCTCGGGTGCAAGAAGATGTACAACGTCGCCAAC 1132912 Query 117404 CCGCTGGACTTTATGAACCTCATCTCCTTGGAG 117436 ||| | |||| ||| | ||||||||| || || Sbjct 1132913 CCGTTCGACTGGATGGAGCTCATCTCCCTGCAG 1132945 Score = 172 bits (190), Expect = 6e-38 Identities = 250/348 (72%), Gaps = 4/348 (1%) Strand=Plus/Minus Query 117091 CGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCT 117150 |||||| || ||||||||||| || || |||||||| ||||| || ||| ||||||||| Sbjct 8707696 CGCCATCTTCTGGCTCAAGAAGCGGGGGCTCATGCCGGGCCTCACCTTCTCCAACGAGCT 8707637 Query 117151 CATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGT 117210 ||||||| | |||||||| ||||| |||||||| ||||| | || | | | | | Sbjct 8707636 CATCTCCCGCGACGAGGGCCTGCACTGCGACTTCGCCTGCCTCCTCTACGA-CCTCCTCC 8707578 Query 117211 GCAGCGACCGAG-CGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGC 117269 || || | | | || |||||||||| | ||||||||| ||||||| |||| ||||||| Sbjct 8707577 GCGGCAAGCTCGACGAGGCGCGCGTCCGCGAGATCGTCGCCGACGCCGTCGACATCGAGA 8707518 Query 117270 AGCGCTTCCTCACCGAAGCGCTGCCGGT-GCGTCTGCTGGGACTCAATTGCGAAACGATG 117328 | ||| || ||| ||||| || || ||| || | || | || |||| ||| Sbjct 8707517 GGGAGTTCGTCTGCGACGCGCTCCCCGTCGCG-CTCGTCGGCATGAACGGCGACCTCATG 8707459 Query 117329 TCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCAC 117388 || ||||||||||||||||||||| | || || | | ||| | | || ||| Sbjct 8707458 AGCCAGTACATCGAGTTCGTCGCCGACCGCCTCCTCATGGCGCTCGGCTGCAAGAAGATG 8707399 Query 117389 TACAACACGCCCAACCCGCTGGACTTTATGAACCTCATCTCCTTGGAG 117436 |||||| ||||||| | |||| ||| | ||||||||| || || Sbjct 8707398 TACAACGTCGCCAACCCCTTCGACTGGATGGAGCTCATCTCCCTGCAG 8707351 Score = 138 bits (152), Expect = 1e-27 Identities = 158/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| |||||||| | || ||||| || | Sbjct 28897530 ATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACCATCACGCTTGAGGTCGAGTCCTCG 28897589 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | |||| || || | ||||| ||||| |||||| ||||||| Sbjct 28897590 GACACGATCGACAACG-TGAAGGCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCA 28897648 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||||| ||| ||||| |||||||| || | |||||| | |||||||| Sbjct 28897649 GCAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACCTTGGCTGACTACAA 28897708 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||||| |||| || || || || Sbjct 28897709 CATCCAGAAGGAGTCCACCCTTCACCTGGT 28897738 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || ||||| ||||| ||||||||| |||| || || || | Sbjct 28421880 ATGCAGATCTTTGTGAAGACACTCACTGGCAAGACCATCACCCTCGAGGTTGAGTCCTCT 28421821 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | |||| || |||| ||||| |||||||| || | |||||| Sbjct 28421820 GATACAATTGACAATGTGAAGGCCAAGATTCAGGACAAGGAGGGCATTCCACCTGACCAG 28421761 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| ||||||| || ||||| || || || || | ||||||||| || |||||| Sbjct 28421760 CAACGTCTCATCTTTGCTGGCAAGCAACTAGAGGATGGCCGCACCCTCGCGGATTACAAC 28421701 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||| |||| || || || || | ||| | ||||| ||| Sbjct 28421700 ATCCAGAAGGAGTCCACCCTCCACCTTGTCCTTCGCCTCAGGGGAGGC 28421653 Score = 123 bits (136), Expect = 3e-23 Identities = 159/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| ||||| ||| | || || || | || Sbjct 28897758 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATTACCCTTGAGGTTGAGTCGTCC 28897817 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | |||| || || | ||||| |||||||||||| ||||||| Sbjct 28897818 GACACTATTGACAACG-TGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCA 28897876 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| || || || ||||| || || | |||||||| || ||||| Sbjct 28897877 GCAGCGTCTGATCTTTGCTGGTAAGCAGCTTGAGGATGGCCGCACCCTTGCGGATTACAA 28897936 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905 ||||||||||||| |||| || || || ||| | ||| Sbjct 28897937 CATCCAGAAGGAGTCCACACTCCACCTGGTGCTCCGC 28897973 >seq8 Length=30429317 Score = 156 bits (172), Expect = 4e-33 Identities = 176/233 (76%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || || || ||||| || |||||||| | || || || || Sbjct 3435694 AAGATGCAGATCTTCGTGAAGACCCTGACGGGGAAGACCATCACGCTGGAGGTGGAGTCC 3435753 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | |||| | | | |||| | |||| || || | ||||| || || |||||| |||| Sbjct 3435754 TCGGACACCATCGACAACG-TGAAGGCCAAGATCCAGGACAAGGAAGGGATCCCCCCGGA 3435812 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| || ||||||| ||| ||||| ||||| || |||| ||||||||| |||||| Sbjct 3435813 CCAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCGCCGACTA 3435872 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCG 40918 |||||||||||||||| |||| || || || ||| | ||| | | ||||||| Sbjct 3435873 CAACATCCAGAAGGAGTCCACCCTCCACCTCGTGCTCCGCCTCCGCGGCGGCG 3435925 Score = 136 bits (150), Expect = 4e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||||| || || ||||| ||||| || || ||| | || || || | | Sbjct 25235096 AATGCAGATTTTCGTCAAGACTCTCACTGGCAAGACAATTACCCTGGAGGTTGAGAGCTC 25235155 Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | | | |||| | |||| || || | || || |||||||||||| |||||| Sbjct 25235156 AGACACCATCGACAACG-TGAAGGCGAAGATCCAGGATAAGGAGGGCATCCCCCCGGACC 25235214 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| ||||||||| ||| || || |||||||| || | |||||||| |||||||| Sbjct 25235215 AGCAGAGACTCATCTTCGCTGGTAAGCAGCTGGAGGATGGCCGCACCCTTGCCGACTACA 25235274 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||| ||||||||| | || || || | ||| | ||| | ||||| || Sbjct 25235275 ACATTCAGAAGGAGTCTACCCTACACTTGGTGCTCCGCCTCAGGGGTGG 25235323 Score = 123 bits (136), Expect = 3e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || ||||| ||||| ||||| ||| | || || || || | Sbjct 25234641 ATGCAGATCTTTGTGAAGACTCTCACTGGCAAGACCATAACCCTTGAGGTTGAGTCCTCA 25234700 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | | |||| || || | ||||| ||||| ||||| |||||||| Sbjct 25234701 GATACCATTGACAATGTAAAGGCCAAGATCCAGGACAAGGAGGGAATCCCACCGGACCAG 25234760 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || ||||||| ||| ||||| ||||| || || | |||||| || ||||||||| Sbjct 25234761 CAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAAGATGGGCGCACGCTTGCTGACTACAAC 25234820 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||| |||| || || || || | ||| | |||| ||| Sbjct 25234821 ATCCAGAAGGAATCCACCCTCCACCTTGTCCTCCGCCTCCGGGGAGGC 25234868 Score = 122 bits (134), Expect = 9e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || || || ||||| || | || ||||| | | Sbjct 9003361 ATGCAGATTTTTGTCAAGACCCTGACCGGAAAGACCATTACGCTTGAGGTCGAGTCTTCT 9003302 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | |||| || |||| ||||| |||||||||||| |||||||| Sbjct 9003301 GATACAATCGACAATGTGAAGGCGAAGATTCAGGACAAGGAGGGCATCCCCCCGGACCAG 9003242 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || ||||||| ||| ||||| ||||| || |||| |||||||| |||||||| Sbjct 9003241 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGACGCACCCTGGCTGACTACAAT 9003182 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 |||||||||||| | || || || |||||| Sbjct 9003181 ATCCAGAAGGAGTCTACCCTTCACCTAGTG 9003152 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| ||||| || | || || || | || Sbjct 25235325 ATGCAGATCTTCGTCAAGACTCTCACTGGCAAGACCATTACTCTGGAGGTTGAGAGCTCC 25235384 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | | |||| || || | ||||| || || || ||| | |||||| Sbjct 25235385 GATACCATCGACAATGTGAAGGCTAAGATCCAGGACAAGGAAGGTATTCCCCCAGACCAG 25235444 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| ||| ||||| |||||||| || | || |||||| |||||||||| Sbjct 25235445 CAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGCCGTACCCTCGCCGACTACAAC 25235504 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 || ||||||||| | || || || || ||| | ||| | ||||| || Sbjct 25235505 ATTCAGAAGGAGTCTACCCTCCACCTGGTGCTCCGCCTCAGGGGTGG 25235551 Score = 111 bits (122), Expect = 2e-19 Identities = 102/129 (79%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 || ||||| |||| ||||| || ||||||| |||||| || |||||||| |||| ||| Sbjct 22660171 GGGATCCCGCCGGATCAGCAGCGGCTCATCTTCGCGGGGAAGCAGCTGGAAGACGGCCGC 22660112 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 || || |||||||||||||||||||||| | ||||| || || ||| | ||| | | Sbjct 22660111 ACGCTGGCCGACTACAACATCCAGAAGGAGTCGACGCTTCACCTGGTGCTCCGCCTCCGC 22660052 Query 40912 GGCGGCGGC 40920 ||||||||| Sbjct 22660051 GGCGGCGGC 22660043 Score = 109 bits (120), Expect = 6e-19 Identities = 153/212 (72%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| || || || || | || ||||||||||| ||| | || || || | | Sbjct 9003134 AATGCAAATCTTTGTCAAGACATTGACCGGCAAAACCATTACCCTGGAGGTTGAGTCGTC 9003075 Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | | |||| | || | ||| |||| ||||| ||| |||| ||| |||| | Sbjct 9003074 AGACACAATTGACAACG-TAAAAGCAAAGATTCAGGACAAGGAGAGCATTCCCCCGGATC 9003016 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| || || |||| || ||||| ||||| || || | |||||| | || |||| Sbjct 9003015 AGCAGCGCCTGATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCTTAGCAGATTACA 9002956 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 |||||||||||||| |||| |||| || ||| Sbjct 9002955 ACATCCAGAAGGAGTCCACCTTGCACCTGGTG 9002924 Score = 93.3 bits (102), Expect = 4e-14 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || | || ||||| || |||||| | || || || | | Sbjct 25234869 ATGCAAATCTTTGTCAAGACCTTGACTGGCAAGACTATCACCCTTGAGGTTGAGTCTTCT 25234928 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | |||| | |||| ||| || | ||||| ||||| || ||| ||||||| Sbjct 25234929 GATACTATTGACAACGTT-AAGGCAAAGATCCAGGACAAGGAGGGGATTCCCCCGGACCA 25234987 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| || ||||| ||||| || || | |||||||| Sbjct 25234988 GCAGCGTCTGATCTTTGCTGGCAAGCAGCTCGAGGATGGNNNNNNNNNNGCTGACTACAA 25235047 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| |||| || || || || ||||| | ||||| || Sbjct 25235048 CATCCAGAAGGAGTCCACCCTTCACCTTGTTCTGCGCCTAAGGGGTGG 25235095 >seq1 Length=46529941 Score = 154 bits (170), Expect = 2e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || ||||| || |||||||| | || || || || | Sbjct 27877738 ATGCAGATCTTCGTGAAGACCCTGACGGGGAAGACCATCACGCTGGAGGTGGAGAGCAGC 27877797 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | || | |||||| || | | ||||| ||||| ||||| |||||||| Sbjct 27877798 GACACGATCCAGAACATCAAGGCGAAGGTGCAGGACAAGGAGGGGATCCCGCCGGACCAG 27877857 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || ||||||| ||| ||||| |||||||| |||| |||||| || |||||||||| Sbjct 27877858 CAGCGGCTCATCTTCGCCGGCAAGCAGCTGGAGGACGGGCGCACGCTGGCCGACTACAAC 27877917 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||| | |||||||| || ||| | ||| | | |||||| Sbjct 27877918 ATCCAGAAGGAGTCGACGCTGCACCTGGTGCTCCGCCTCCGCGGCGGC 27877965 Score = 152 bits (168), Expect = 5e-32 Identities = 175/233 (75%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || || || ||||| || || ||||| | || || || || Sbjct 14154416 AAGATGCAGATCTTCGTGAAGACCCTGACGGGGAAGACGATCACGCTGGAGGTGGAGTCC 14154357 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | |||| | | | |||| | |||| || || | ||||| ||||| ||||| | || Sbjct 14154356 TCGGACACCATCGACAACG-TGAAGGCGAAGATCCAGGACAAGGAGGGGATCCCGCCCGA 14154298 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| || ||||||| ||| ||||| |||||||| |||| |||||||||| |||||| Sbjct 14154297 CCAGCAGCGGCTCATCTTCGCCGGCAAGCAGCTGGAGGACGGGCGCACCCTCGCCGACTA 14154238 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCG 40918 |||||||||||||||| | || || || || ||| | ||| | | ||||||| Sbjct 14154237 CAACATCCAGAAGGAGTCGACCCTCCACCTGGTGCTCCGCCTCCGCGGCGGCG 14154185 Score = 136 bits (150), Expect = 4e-27 Identities = 165/222 (74%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 40685 GAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAG 40744 |||| ||||| |||||||| || || || | || | |||||||| ||| ||||| Sbjct 27882164 GAAAGATGCAGATATTCGTGAAGACCCTGAACGGGAGGACCATCACGCTCGTGGTCGACA 27882223 Query 40745 CCACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCG 40803 | |||| || | |||| |||||| | || | ||||| |||||| |||| || Sbjct 27882224 GCTGCGACTCGGTCGAGAACG-TCAAGGCGAGGATCCACGACAGGGAGGGCGTCCCGCCG 27882282 Query 40804 GACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGAC 40863 ||||||| || ||||||| ||| ||||| |||||||| |||| ||||| || |||| Sbjct 27882283 CACCAGCAGCGGCTCATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGGCCGAC 27882342 Query 40864 TACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905 |||||||||||||||||| | |||||||| || ||| | ||| Sbjct 27882343 TACAACATCCAGAAGGAGTCGACGCTGCACCTCGTGCTCCGC 27882384 Score = 86.0 bits (94), Expect = 6e-12 Identities = 81/101 (80%), Gaps = 3/101 (3%) Strand=Plus/Minus Query 73584 AACCACGCCGTGCTGCTGGTCGGCTACGG--CGTCGAGA-ACGGAGTGCCCTACTGGGTG 73640 |||||||| ||| | ||||||| ||||| || |||| |||| ||| |||||| || Sbjct 26541986 AACCACGCGGTGGCGGTGGTCGGGTACGGGACGGCGAGCGACGGCACGCCGTACTGGCTG 26541927 Query 73641 TTCAAGAACACGTGGGGCGACGACTGGGGCGAGAACGGCTA 73681 |||||||| |||||||| ||||||||| ||||||||||| Sbjct 26541926 CTCAAGAACTCGTGGGGCACCGACTGGGGGGAGAACGGCTA 26541886 >seq7 Length=32884216 Score = 145 bits (160), Expect = 8e-30 Identities = 164/217 (76%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| |||||||| || || ||||| ||||| |||||||| | || || || || | Sbjct 29193971 ATGCAGATATTCGTGAAGACCCTCACTGGCAAGACCATCACTCTGGAGGTTGAGTCCTCT 29194030 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || || | || || ||||||||||| | ||||| Sbjct 29194031 GACACCATCGACAACG-TGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCA 29194089 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||||| ||| ||||| ||||| || || | |||||||| |||||| || Sbjct 29194090 GCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTTGCCGACTATAA 29194149 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905 ||||||||||||| |||| ||||| || || ||||| Sbjct 29194150 CATCCAGAAGGAGTCCACCCTGCACCTTGTCCTGCGC 29194186 Score = 141 bits (156), Expect = 1e-28 Identities = 159/210 (76%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| |||||||| || || ||||| ||||| ||||||||| | || || || || || Sbjct 29193242 ATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTTGAGTCCTCC 29193301 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | || || | | |||| || |||| ||||| ||||||||||| ||||||| Sbjct 29193302 GATATGATTGACAATG-TGAAGGCTAAGATTCAGGACAAGGAGGGCATCCCTCCGGACCA 29193360 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| || |||| ||| ||||| ||||| || || | ||| || ||| || || || Sbjct 29193361 GCAACGCCTTATCTTCGCTGGCAAGCAGCTTGAGGATGGGCGTACTCTCGCGGATTATAA 29193420 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||||| |||| |||| || || Sbjct 29193421 CATCCAGAAGGAGTCCACCTTGCACCTTGT 29193450 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||||||||| || || ||||| ||||| ||||| ||| | || ||||| || || Sbjct 29193470 ATGCAAATATTCGTGAAGACCCTCACCGGCAAGACCATTACCCTGGAGGTCGAGTCCTCC 29193529 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||| || || | ||||| ||||| ||||| | |||||| Sbjct 29193530 GACACGATCGATAATGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCACCAGACCAG 29193589 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || ||||||| || || || ||||| || || | |||||||| ||||||||| Sbjct 29193590 CAGCGTCTCATCTTTGCTGGGAAGCAGCTCGAGGATGGCCGCACCCTTGCAGACTACAAC 29193649 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||| ||||| |||| ||||| || || ||||| | ||||||| Sbjct 29193650 ATCCAAAAGGAATCCACCCTGCACCTTGTCCTGCGCCTCCGGGGCGG 29193696 Score = 100 bits (110), Expect = 3e-16 Identities = 96/123 (78%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| ||||| || || | |||||||| || ||||||| ||| ||||| ||||| || Sbjct 29193836 GACAAGGAGGGTATTCCACCAGACCAGCAGCGCCTCATCTTCGCTGGCAAGCAGCTTGAG 29193895 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 || | |||||||| || |||||||||||||||||| |||| ||||| || || || Sbjct 29193896 GATGGTCGCACCCTTGCAGATTACAACATCCAGAAGGAGTCCACCCTGCACCTTGTCCTG 29193955 Query 40903 CGC 40905 ||| Sbjct 29193956 CGC 29193958 >seq11 Length=27185770 Score = 125 bits (138), Expect = 7e-24 Identities = 156/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || ||||| |||||||| | || || || || | Sbjct 4344821 ATGCAGATCTTTGTGAAGACCCTGACCGGCAAGTCCATCACCCTTGAGGTGGAGTCCTCG 4344762 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || || | ||||| ||||| ||||| | ||||| Sbjct 4344761 GACACCATCGACAACG-TGAAGGCGAAGATCCAGGACAAGGAGGGGATCCCTCCTGACCA 4344703 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||||| ||| ||||| ||||| || || | |||||||| |||||||| Sbjct 4344702 GCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGAAGGACGCACCCTTGCTGACTACAA 4344643 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 ||| ||||||||| |||| || ||||| ||| Sbjct 4344642 CATTCAGAAGGAGTCCACCCTCCATCTTGTG 4344612 >seq5 Length=38039368 Score = 122 bits (134), Expect = 9e-23 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || | || ||||| || |||||| |||| || || || | Sbjct 3287080 ATGCAGATCTTTGTGAAGACATTGACCGGCAAGACTATCACCCTCGAGGTGGAGTCCTCT 3287021 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| || || | || || |||||||||||| |||||||| Sbjct 3287020 GACACCATCGATAATGTCAAGGCTAAGATCCAAGATAAGGAGGGCATCCCCCCGGACCAG 3286961 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || ||||||| ||| ||||| |||||||| || | | ||||| ||||||||| Sbjct 3286960 CAGCGTCTCATCTTCGCTGGCAAGCAGCTGGAGGATGGCAGGACCCTTGCTGACTACAAC 3286901 Query 40870 ATCCAGAAGGAG 40881 |||||||||||| Sbjct 3286900 ATCCAGAAGGAG 3286889 >seq12 Length=23490084 Score = 116 bits (128), Expect = 4e-21 Identities = 103/129 (80%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 || ||||| |||||||||| || ||||||| |||||| || |||||||| || | ||| Sbjct 18639249 GGTATCCCTCCGGACCAGCAGCGCCTCATCTTCGCGGGGAAGCAGCTGGAGGATGGCCGC 18639308 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 ||||| |||||||||||||||||||||| | |||||||| || ||| | ||| | | Sbjct 18639309 ACCCTGGCCGACTACAACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTCCGCCTCCGC 18639368 Query 40912 GGCGGCGGC 40920 |||||| || Sbjct 18639369 GGCGGCAGC 18639377 Score = 116 bits (128), Expect = 4e-21 Identities = 103/129 (80%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 || ||||| |||||||||| || ||||||| ||| || || |||||||| |||| ||| Sbjct 18656926 GGTATCCCGCCGGACCAGCAGCGCCTCATCTTCGCCGGGAAGCAGCTGGATGACGGCCGC 18656985 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 ||||| |||||||||||||||||||||| | |||||||| || ||| | ||| | | Sbjct 18656986 ACCCTGGCCGACTACAACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTCCGCCTCCGC 18657045 Query 40912 GGCGGCGGC 40920 |||||| || Sbjct 18657046 GGCGGCAGC 18657054 Score = 113 bits (124), Expect = 5e-20 Identities = 89/107 (83%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 |||||||| |||||||||| || ||||||| ||| ||||| |||||||| || | ||| Sbjct 23214020 GGCATCCCTCCGGACCAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGC 23214079 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||| |||||||||||||||||||||| ||||||| || || || Sbjct 23214080 ACCCTGGCCGACTACAACATCCAGAAGGAGTCCACGCTCCACCTCGT 23214126 Score = 98.7 bits (108), Expect = 1e-15 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 || ||||| |||||||||| || ||||||| |||||| || ||||| || || | ||| Sbjct 16934209 GGTATCCCGCCGGACCAGCAGCGTCTCATCTTCGCGGGGAAGCAGCTCGAGGATGGCCGC 16934268 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905 ||||| |||||||||||| ||||||||| | ||||| || || ||| | ||| Sbjct 16934269 ACCCTGGCCGACTACAACATTCAGAAGGAGTCGACGCTTCACCTGGTGCTCCGC 16934322 >seq10 Length=28350858 Score = 107 bits (118), Expect = 2e-18 Identities = 101/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 || ||||| |||||||||| || || |||| ||| || || |||||||| |||| || Sbjct 16401514 GGGATCCCGCCGGACCAGCAGCGGCTGATCTTCGCCGGGAAGCAGCTGGAGGACGGCCGG 16401455 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 || || |||||||||||||||||||||| | |||||||| || ||| | ||| | | Sbjct 16401454 ACGCTGGCCGACTACAACATCCAGAAGGAGTCGACGCTGCACCTCGTGCTTCGCCTCCGC 16401395 Query 40912 GGCGGCGGC 40920 ||||||||| Sbjct 16401394 GGCGGCGGC 16401386 >seq6 Length=37594838 Score = 105 bits (116), Expect = 7e-18 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 || ||||| |||||||||| || ||||||| ||| || || |||||||| || | ||| Sbjct 8552740 GGTATCCCGCCGGACCAGCAGCGCCTCATCTTCGCCGGGAAGCAGCTGGAGGATGGCCGC 8552799 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 || || |||||||||||||||||||||| ||||||| || || ||| | ||| | | Sbjct 8552800 ACGCTGGCCGACTACAACATCCAGAAGGAGTCCACGCTTCACCTGGTGCTTCGCCTACGC 8552859 Query 40912 GGCGGC 40917 |||||| Sbjct 8552860 GGCGGC 8552865 Score = 95.1 bits (104), Expect = 1e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 || ||||| |||||||||| || || |||| ||| || || |||||||| |||| ||| Sbjct 7379131 GGAATCCCGCCGGACCAGCAGCGGCTGATCTTCGCCGGGAAGCAGCTGGAGGACGGACGC 7379072 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||| ||||||||||||||||||||| |||| || || || || Sbjct 7379071 ACCCTGGCTGACTACAACATCCAGAAGGAGTCCACCCTCCACCTCGT 7379025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515219122717120