Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq9 111 3e-19 seq5 95.1 3e-14 seq4 86.0 1e-11 >seq9 Length=31548187 Score = 111 bits (122), Expect = 3e-19 Identities = 138/189 (73%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 157258 GTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCAT 157317 ||| ||| | || | ||||| || ||||||||||| ||||| || || || | ||||| Sbjct 1132984 GTAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCAT 1132925 Query 157318 CCACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTACCCCAGCTGGTTCAGCCAGTA 157377 ||| ||||| ||||||||| |||||||| ||| | | |||| ||| | ||| Sbjct 1132924 CCAGTCGAACGGGTTGGCGACGTTGTACATCTTCTTGCACCCGAGCGCCATGAGCAGCCG 1132865 Query 157378 GTCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCTGATACCGATGAGCGCGAC 157437 ||| || || |||| |||||||| ||||| || || | || |||| ||||||||| Sbjct 1132864 GTCGGCGACGAACTCGATGTACTGGCTCATGAGCTCGCCGTTCATCCCGACGAGCGCGAC 1132805 Query 157438 GGGAAGCGC 157446 ||| ||||| Sbjct 1132804 GGGGAGCGC 1132796 Score = 102 bits (112), Expect = 2e-16 Identities = 136/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 157258 GTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCAT 157317 ||| ||| | || | ||||| || ||||||||||| ||||| || || || | ||||| Sbjct 8707312 GTAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCAT 8707371 Query 157318 CCACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTACCCCAGCTGGTTCAGCCAGTA 157377 ||| ||||| ||||||||| |||||||| ||| | | | || ||| | || | Sbjct 8707372 CCAGTCGAAGGGGTTGGCGACGTTGTACATCTTCTTGCAGCCGAGCGCCATGAGGAGGCG 8707431 Query 157378 GTCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCTGATACCGATGAGCGCGAC 157437 ||| || || |||| |||||||| ||||| | || | || |||| ||||||||| Sbjct 8707432 GTCGGCGACGAACTCGATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGCGCGAC 8707491 Query 157438 GGGAAGCGC 157446 ||| ||||| Sbjct 8707492 GGGGAGCGC 8707500 Score = 98.7 bits (108), Expect = 2e-15 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 248809 GATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATT 248868 || || || || || | |||| |||||| || ||||||| ||| || ||||| ||| || Sbjct 3307878 GACTTCGATTATGACTATTTTGGTTTCAAGACTCTGGAGAGATCTTACCTCCTGAAACTT 3307819 Query 248869 GATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCAC 248928 | || ||| | || ||| | ||||||||||| ||| |||| | || || || ||| Sbjct 3307818 GGCGGGAAGGTTGTTGAAAGGCCACAGCACATGTTAATGAGAGTTTCAGTGGGTATACAC 3307759 Query 248929 AAGGATGACATAGAGAGCGTGCTCGAGACGTA-CACCGGAATGAGTGAACGCTGGATGAC 248987 ||||||||||| ||| | || |||| || || | | ||| | | |||||| | || Sbjct 3307758 AAGGATGACATTGAGTCTGCTATCAAGACCTACCATCTG-ATGTCTCAGCGCTGGTTTAC 3307700 Query 248988 ACATGCCACACCGACGCTCTTCAACGCCGGTAC 249020 ||||| | ||||| || ||||| || || || Sbjct 3307699 TCATGCTTCGCCGACCCTTTTCAATGCTGGCAC 3307667 >seq5 Length=38039368 Score = 95.1 bits (104), Expect = 3e-14 Identities = 154/218 (71%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 248805 CAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAA 248864 || |||||| || || || | ||||| ||| || || || |||| ||| ||||| | || Sbjct 36490695 CAGAGATTTTGACTATGACTACTTTGGTTTTAAGACCCTTGAGAGATCTTATCTGTTAAA 36490754 Query 248865 AATTGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGAT 248924 | ||| ||| ||| | |||||| || ||||| ||| | ||| |||| || | ||||| Sbjct 36490755 AGTTGTTGGGAAGGTTGTGGAAAGACCACAGCATATGCTAATGAGAGTTTCTATTGGGAT 36490814 Query 248925 TCACAAGGATGACATAGAGAGCGTGC--TCGAGACGTACACCGGAATGAGTGAACGCTGG 248982 ||||||||||| || || | | ||| || | |||||| | ||| | | |||||| Sbjct 36490815 ACACAAGGATGATATTGA-ATC-TGCTATCAAAACGTACCACATGATGTCTCAGCGCTGG 36490872 Query 248983 ATGACACATGCCACACCGACGCTCTTCAACGCCGGTAC 249020 | || ||||| | || || || ||||| || || || Sbjct 36490873 TTTACTCATGCTTCGCCAACCCTTTTCAATGCTGGCAC 36490910 >seq4 Length=26741765 Score = 86.0 bits (94), Expect = 1e-11 Identities = 126/176 (72%), Gaps = 2/176 (1%) Strand=Plus/Plus Query 239762 GTACTACGAATTCTTGGGTGTTGATGCG-GGCGCCGGTGACGAAGAGATAAAGAAAGCGT 239820 ||||||||| || | || || | ||| ||||||| | ||| ||||| | | |||| Sbjct 25691633 GTACTACGACCTCCTCGGCGT-GCCGCGCGGCGCCGACGGCGACGAGATCAGGCGCGCGT 25691691 Query 239821 ACCGGCGTCTCGCCCTGCAGCACCACCCGGACAAGAACGGCGACCCGGAGAAGTTCAAGC 239880 ||||||| |||| || |||||||||||||||| ||||||| |||| ||||||| Sbjct 25691692 ACCGGCGCGCCGCCGTGACGCACCACCCGGACAAGGGCGGCGACGAGGAGGCGTTCAAGG 25691751 Query 239881 AGTTGACCGATGTGTACGACGTGCTCAAAGATCCCGCTAAGCGGCGGGTGTACGAC 239936 || || || | |||| | |||||| || ||||| ||| ||| |||||| Sbjct 25691752 AGGTGGCCCGCGCGTACCAGGTGCTCGGCGACCCCGCCCTGCGCGAGGTCTACGAC 25691807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073766234908416