Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq1 132 4e-26 seq12 111 1e-19 seq11 111 1e-19 seq8 109 4e-19 seq9 98.7 8e-16 >seq1 Length=46529941 Score = 132 bits (146), Expect = 4e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || || ||||||||| |||||||||||| || ||| |||| ||| Sbjct 14154205 ACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGCCCGTCCTCC 14154264 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || |||||||| || | |||||| |||||||| || | |||||||||||| Sbjct 14154265 AGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCGGGCGGGATCCCCTCCTTGTCCTGG 14154324 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | ||||| ||||||||||| || |||||||| Sbjct 14154325 ATCTTCGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCACCTCCAGCGTGATCGTCTTC 14154384 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340 |||||||| |||||||| ||||| ||||| ||| Sbjct 14154385 CCCGTCAGGGTCTTCACGAAGATCTGCATCTTG 14154417 Score = 125 bits (138), Expect = 6e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||||||||| ||||||||| |||||||||||| ||| ||| |||| ||| Sbjct 27877946 ACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGCCCGTCCTCC 27877887 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || |||||||| || | |||||| ||||| || || | |||||||||||| Sbjct 27877886 AGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCCGGCGGGATCCCCTCCTTGTCCTGC 27877827 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 | || ||| | | | |||| | | ||||||||||| || || ||||| Sbjct 27877826 ACCTTCGCCTTGATGTTCTGGATCGTGTCGCTGCTCTCCACCTCCAGCGTGATGGTCTTC 27877767 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||||||| |||||||| ||||| ||||| Sbjct 27877766 CCCGTCAGGGTCTTCACGAAGATCTGCAT 27877738 Score = 87.8 bits (96), Expect = 1e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||||||||| ||||||||| |||||||||||| ||| ||| |||| ||||| || Sbjct 27882372 GTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGGCCGTCCTCCAGCTG 27882313 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTC 45243 || |||||||| || | |||||| |||| || || || |||||| |||| Sbjct 27882312 CTTGCCGGCGAAGATGAGCCGCTGCTGGTGCGGCGGGACGCCCTCCCTGTC 27882262 >seq12 Length=23490084 Score = 111 bits (122), Expect = 1e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||| || | || | |||||||| || || |||||||||||||||||||||| Sbjct 15024004 GCCACCCCTGAGCCTGAGGACCAAGTGAAGAGTTGACTCCTTCTGAATGTTGTAGTCGGC 15023945 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 |||| ||| | || ||||| || || |||||||||||||| |||||||| || ||||| Sbjct 15023944 CAGTGTGCGCCCATCTTCCAGCTGCTTGCCGGCGAATATCAAACGCTGTTGATCTGGAGG 15023885 Query 45229 CACACCCTCCTTGTCC 45244 | || ||||||||| Sbjct 15023884 GATCCCTTCCTTGTCC 15023869 >seq11 Length=27185770 Score = 111 bits (122), Expect = 1e-19 Identities = 150/208 (72%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 45130 CAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188 |||| || || ||| ||||||||||||||||||||| || ||| | || || | Sbjct 4344614 CAAGATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCAGCAAGGGTGCGTCCTTCCTCGA 4344673 Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248 | || || |||||||| || | ||||| ||||| ||||| | |||||||||||| | Sbjct 4344674 GCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCAGGAGGGATCCCCTCCTTGTCCTGGA 4344733 Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308 | || ||| || | | | ||||| ||||||||| | ||| || | ||||| Sbjct 4344734 TCTTCGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCACCTCAAGGGTGATGGACTTGC 4344793 Query 45309 CCGTCAGAGTCTTCACAAAGATTTGCAT 45336 | ||||| |||||||||||||| ||||| Sbjct 4344794 CGGTCAGGGTCTTCACAAAGATCTGCAT 4344821 >seq8 Length=30429317 Score = 109 bits (120), Expect = 4e-19 Identities = 149/208 (72%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| ||||||||| |||||||||||| || ||| |||| || || || Sbjct 3435900 GTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTG 3435841 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || |||||||| || | ||||| ||||| || || | || ||||||||| || || Sbjct 3435840 CTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGGGGGATCCCTTCCTTGTCCTGGATCTT 3435781 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | ||||| ||||||||||| || || ||||| ||||| Sbjct 3435780 GGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCACCTCCAGCGTGATGGTCTTCCCCGT 3435721 Query 45313 CAGAGTCTTCACAAAGATTTGCATGTTG 45340 ||| |||||||| ||||| ||||| ||| Sbjct 3435720 CAGGGTCTTCACGAAGATCTGCATCTTG 3435693 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || |||||||||||||||||||||| || ||| | || ||| Sbjct 25235305 ACCAAGTGTAGGGTAGACTCCTTCTGAATGTTGTAGTCGGCAAGGGTGCGGCCATCCTCC 25235246 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || ||||| || | | ||| ||||| || || | |||||||| ||| Sbjct 25235245 AGCTGCTTACCAGCGAAGATGAGTCTCTGCTGGTCCGGGGGGATGCCCTCCTTATCCTGG 25235186 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| | ||| ||||||| |||||| |||||| Sbjct 25235185 ATCTTCGCCTTCACGTTGTCGATGGTGTCTGAGCTCTCAACCTCCAGGGTAATTGTCTTG 25235126 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || |||||||| || || || ||||| Sbjct 25235125 CCAGTGAGAGTCTTGACGAAAATCTGCAT 25235097 Score = 82.4 bits (90), Expect = 6e-11 Identities = 139/205 (68%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| ||||||||| ||||||||||| | || || || || Sbjct 25235072 GTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCNNNNNNNNNNCCATCCTCGAGCTG 25235013 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || || || || |||| ||||| ||||| || || | |||||||||||| || || Sbjct 25235012 CTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGGGGAATCCCCTCCTTGTCCTGGATCTT 25234953 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 | |||||| | | | || | ||| ||||| | ||| || |||||||| || Sbjct 25234952 TGCCTTAACGTTGTCAATAGTATCAGAAGACTCAACCTCAAGGGTGATAGTCTTGCCAGT 25234893 Query 45313 CAGAGTCTTCACAAAGATTTGCATG 45337 || ||||| ||||||||||||||| Sbjct 25234892 CAAGGTCTTGACAAAGATTTGCATG 25234868 >seq9 Length=31548187 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||| || | || | |||| ||| || ||| ||||||||| ||||||||||| | Sbjct 28897756 CCACCCCTGAGCCTGAGAACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCC 28897697 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 | ||| | || ||||| || || |||||||| || | ||||| ||||| || || Sbjct 28897696 AAGGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGG 28897637 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||||||||||||| || || ||| || | | ||||| ||| ||| Sbjct 28897636 ATACCCTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATCGTGTCCGAGGACTCGACC 28897577 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | || || |||||||| ||||| ||||| || ||||| ||||| Sbjct 28897576 TCAAGCGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 28897530 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||||| ||| |||||||||||||||||| || |||| || | || || Sbjct 28421444 ACCAGGTGCAAGGTGGACTCCTTCTGAATGTTGTAATCAGCCAGTGTACGTCCATCCTCG 28421503 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || || || | ||||| ||||| || || | |||||||||||| | Sbjct 28421504 AGCTGCTTGCCTGCAAAGATGAGGCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGA 28421563 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | ||||| ||| ||||| | || || ||||| Sbjct 28421564 ATCTTCGCCTTCACATTGTCGATCTTGTCCGAGGACTCGACCTCAAGAGTGATGGTCTTT 28421623 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || |||| |||||||||||||| |||||| Sbjct 28421624 CCTGTCAAGGTCTTCACAAAGATCTGCATG 28421653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395075142220252