Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq9 161 9e-35 seq1 100 3e-16 seq8 91.5 1e-13 seq7 86.0 6e-12 seq5 86.0 6e-12 seq12 82.4 7e-11 >seq9 Length=31548187 Score = 161 bits (178), Expect = 9e-35 Identities = 469/711 (66%), Gaps = 11/711 (2%) Strand=Plus/Plus Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 |||||| | || || |||||||| ||||| || || || |||||| | | | || Sbjct 1132265 CACGTGCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTGCTCGAGAACCTCGCCTCCAGG 1132324 Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806 || || ||||| || | |||||| | ||| ||||| || || | ||||| Sbjct 1132325 TTCATGTCCGACGTGCAGGTCGCCGAGGCGCGCGCCTTCTACGGCTTCCAGATCGCCATC 1132384 Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGAC 57866 || ||| | || || || ||||| ||||| || |||| |||||| | ||| ||| | Sbjct 1132385 GAGAACATCCACTCGGAGATGTACTCGCTTCTGCTCGAGACGTACATCCGCGACGACGTC 1132444 Query 57867 GAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGAT-CGCCAAGAAGGCAGA 57925 ||||| | || ||| ||| ||||| || | ||||| | |||| ||||| || Sbjct 1132445 GAGAAGGACCGCCTCTTCCGCGCCATCGACACCGTCCCCGCCGTGCGCCGC-AAGGCCGA 1132503 Query 57926 GTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTT 57985 ||| | || |||||| | ||| | | | ||||||||| | || |||| || Sbjct 1132504 CTGGGCCATGCGATGGATCGACGGCGGCGAGCGC---TTCGCCGAGCGCCTCGTCGCCTT 1132560 Query 57986 CGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTT-TGCGGCAATATTTTGGATGAAGA 58044 |||| |||||| || || ||||| ||||| || |||| || | || ||| | |||| Sbjct 1132561 CGCCTGCGTCGAGGGGATCTTCTTCTCGGGTTCATTCTGCGCCA-TCTTCTGGCTCAAGA 1132619 Query 58045 AACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTC 58104 | ||||| || ||||| ||||| || || ||||||| | || || ||||||||||||| Sbjct 1132620 AGCGCGGACTCATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGTC 1132679 Query 58105 TCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAAC-CGACGCGGGAT 58163 |||| || || || ||||| | ||| | | | | || | ||||| | | Sbjct 1132680 TCCACTGCGACTTCGCCTGCCTCCTCTACGACCTCCTCCGCGGCAAGCTCGACGAGTCA- 1132738 Query 58164 CGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCC 58223 ||| || ||| || || |||| || || | ||||| | ||||| ||| ||| || Sbjct 1132739 CGCGTCCAGGAGATCGTCGCCGACGCCGTGGACATCGAGAGGGAGTTCGTCTGCGACGCG 1132798 Query 58224 CTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTT 58283 || || || || | |||| |||||| || | ||| ||||||| ||||| || Sbjct 1132799 CTCCCCGTCGCGCTCGTCGGGATGAACGGCGAGCTCATGAGCCAGTACATCGAGTTCGTC 1132858 Query 58284 GCCGACAGACTTTTGCTCGAACT-GATTGGAGAGCGTCATTACAACACGAAAAATCCGTT 58342 |||||| | || | | | || | || | || |||||| || ||||| Sbjct 1132859 GCCGACCGGCTGCTCATGGCGCTCGGGTGCA-AGAAGATGTACAACGTCGCCAACCCGTT 1132917 Query 58343 TGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGAAAA 58393 || | ||| | || ||||| || |||||||||| ||||| ||||| || Sbjct 1132918 CGACTGGATGGAGCTCATCTCCCTGCAGGGCAAGACCAACTTCTTCGAGAA 1132968 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| ||||| ||||| || ||||| | || || || | || Sbjct 28897530 ATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACCATCACGCTTGAGGTCGAGTCCTCG 28897589 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || || | || ||||||||| || | || || |||||| Sbjct 28897590 GACACGATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAG 28897649 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || ||||| ||||| ||| |||| || || || || || ||| Sbjct 28897650 CAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACCTTGGCTGACTACAAC 28897709 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || || || || || || ||||| ||||| || || || ||||| || Sbjct 28897710 ATCCAGAAGGAGTCCACCCTTCACCTGGTTCTCAGGCTCAGGGGTGG 28897756 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| ||||| ||||| || || ||| | || ||||| ||||| Sbjct 28897758 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATTACCCTTGAGGTTGAGTCGTCC 28897817 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | || | || || || || ||||||||| ||| | || || |||||| Sbjct 28897818 GACACTATTGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 28897877 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||||| || || ||||| || ||| | || || Sbjct 28897878 CAGCGTCTGATCTTTGCTGGTAAGCAGCTTGAGGA 28897912 >seq1 Length=46529941 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || ||||| ||||| ||||| || || |||||||| | || || || | Sbjct 14154416 AAGATGCAGATCTTCGTGAAGACCCTGACGGGGAAGACGATCACGCTGGAGGTGGAGTCC 14154357 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || |||| |||| | || || || || ||||||||| || | ||||||||| Sbjct 14154356 TCGGACACCATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGGATCCCGCCCGAC 14154297 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 |||||||| || || ||||| ||||| ||| |||| ||| || | ||| || Sbjct 14154296 CAGCAGCGGCTCATCTTCGCCGGCAAGCAGCTGGAGGACGGGCGCACCCTCGCCGACTAC 14154237 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || || || ||||| || || ||||| || Sbjct 14154236 AACATCCAGAAGGAGTCGACCCTCCACCTGGTGCT 14154202 >seq8 Length=30429317 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| |||||||| || ||||| || || || | || ||||| ||| Sbjct 25235325 ATGCAGATCTTCGTCAAGACTCTCACTGGCAAGACCATTACTCTGGAGGTTGAGAGCTCC 25235384 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | || || | || |||||||||||| | || || |||||| Sbjct 25235385 GATACCATCGACAATGTGAAGGCTAAGATCCAGGACAAGGAAGGTATTCCCCCAGACCAG 25235444 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| || || ||||| ||||| ||| ||||||| || | ||| || ||| Sbjct 25235445 CAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGCCGTACCCTCGCCGACTACAAC 25235504 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 ||||| || || || || || || ||||| || | || ||||| ||| Sbjct 25235505 ATTCAGAAGGAGTCTACCCTCCACCTGGTGCTCCGCCTCAGGGGTGGT 25235552 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| || || ||||| || || ||| | || ||||| | || Sbjct 9003589 ATGCAGATCTTTGTGAAGACACTCACTGGCAAGACCATAACCCTAGAGGTTGAGTCCTCT 9003530 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | ||||| | || ||||||||| || | || || |||||| Sbjct 9003529 GACACGATTGACAATGTCAAGGCCAAGATTCAGGACAAGGAGGGTATTCCACCTGACCAG 9003470 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| || || || || ||||| || | || ||| || | ||||| ||| Sbjct 9003469 CAGCGCCTCATCTTTGCGGGCAAGCAACTTGAGGACGGGCGCACCCTCGCAGATTACAAC 9003410 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||| ||||| || || ||||| || || ||||| |||||||| || Sbjct 9003409 ATTCAGAAAGAGTCCACCCTTCACCTTGTGCTTAGGCTGAGGGGAGG 9003363 Score = 87.8 bits (96), Expect = 2e-12 Identities = 115/157 (73%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| || || ||||| |||| ||||| || |||||| | || ||||| | || Sbjct 25234868 CATGCAAATCTTTGTCAAGACCTTGACTGGCAAGACTATCACCCTTGAGGTTGAGTCTTC 25234927 Query 31252 CGACAGTGTCGA-AACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310 || | | | || |||| | | || ||| | ||||||||| || | || || |||| Sbjct 25234928 TGATACTATTGACAACGTTAAGGCAAAGA-TCCAGGACAAGGAGGGGATTCCCCCGGACC 25234986 Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||||||| || || |||||||| ||| | || || Sbjct 25234987 AGCAGCGTCTGATCTTTGCTGGCAAGCAGCTCGAGGA 25235023 >seq7 Length=32884216 Score = 86.0 bits (94), Expect = 6e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| ||||| ||||| || || ||||| || || ||| | || || || | || Sbjct 29193469 CATGCAAATATTCGTGAAGACCCTCACCGGCAAGACCATTACCCTGGAGGTCGAGTCCTC 29193528 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| |||| | || || | || ||||||||| || | || || ||||| Sbjct 29193529 CGACACGATCGATAATGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCACCAGACCA 29193588 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| || || ||||| || ||| | || || || | || || || Sbjct 29193589 GCAGCGTCTCATCTTTGCTGGGAAGCAGCTCGAGGATGGCCGCACCCTTGCAGACTACAA 29193648 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||| ||||| ||||| || || || || || || | || ||||||||| Sbjct 29193649 CATCCAAAAGGAATCCACCCTGCACCTTGTCCTGCGCCTCCGGGGCGGTA 29193698 >seq5 Length=38039368 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| |||| ||||| || |||||| |||| || || | || Sbjct 3287080 ATGCAGATCTTTGTGAAGACATTGACCGGCAAGACTATCACCCTCGAGGTGGAGTCCTCT 3287021 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || || ||||| ||| | || || |||||| Sbjct 3287020 GACACCATCGATAATGTCAAGGCTAAGATCCAAGATAAGGAGGGCATCCCCCCGGACCAG 3286961 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||||| || ||||||||||| ||| |||| || Sbjct 3286960 CAGCGTCTCATCTTCGCTGGCAAGCAGCTGGAGGA 3286926 >seq12 Length=23490084 Score = 82.4 bits (90), Expect = 7e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 31285 GGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGA 31344 |||||||||||| | || || || || |||||| | |||||||| ||||| ||| |||| Sbjct 15023869 GGACAAGGAAGGGATCCCTCCAGATCAACAGCGTTTGATATTCGCCGGCAAGCAGCTGGA 15023928 Query 31345 AGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || || ||| || |||||||| || || || |||||||| |||| || Sbjct 15023929 AGATGGGCGCACACTGGCCGACTACAACATTCAGAAGGAGTCAACTCTTCACTTGGTCCT 15023988 Query 31405 TAGACTGAGGGGCGG 31419 || || ||||| || Sbjct 15023989 CAGGCTCAGGGGTGG 15024003 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445766333135040