Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq9 104 3e-17 >seq9 Length=31548187 Score = 104 bits (114), Expect = 3e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 66455 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 66514 ||| || ||||| || | ||| || ||||| || |||||||| | ||| | |||| Sbjct 3307666 AGTGCCAGCATTGAAAAGGGTCGGCGAAGCATGAGTAAACCAGCGCTGAGACATCAGATG 3307725 Query 66515 GTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTA 66573 ||| |||| ||||| || || || || | ||| || || || |||| || | ||||| Sbjct 3307726 GTAGGTCTTGATAGCAGACTCAATGTCATCCTTG-TGTATACCCACTGAAACTCTCATTA 3307784 Query 66574 ACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCA 66633 |||||||||| || |||||||| | ||| | | ||||| | ||| ||| | |||| Sbjct 3307785 ACATGTGCTGTGGCCTTTCAACAACCTTCCCGCCAAGTTTCAGGAGGTAAGATCTCTCCA 3307844 Query 66634 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 66682 ||| || ||||||||||||| || ||||| | || ||||| || Sbjct 3307845 GAGTCTTGAAACCAAAATAGTCATAATCGAAGTCCCTATCATAAATTAT 3307893 Score = 95.1 bits (104), Expect = 2e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 66215 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 66274 ||| || ||||| | || | || || | ||| |||| | | ||| |||| ||| || Sbjct 3307347 TCCACCTTGATCAACATAACGGGCAGTATCATTGAAAACACGTAGCATAGGAACAATCCC 3307406 Query 66275 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGA 66334 |||||| || ||||| || || ||||||||| ||| | || |||||||| || ||| Sbjct 3307407 ATTGGAGGTTCCATTTGTTCCACGGATATAGCTCCCAGTAGCTCGAATATTGTGAACTGA 3307466 Query 66335 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 66394 | ||| ||||| || || ||| || | || ||| || || ||||||||||| Sbjct 3307467 GACACCAATTCCTCCAGCAGATTTGCTTATGACAGCACATTCCTTCAAAGTATCATAGAT 3307526 Query 66395 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 66436 ||||| || || ||||| ||||| | || |||||||| Sbjct 3307527 TCCCTCAATGCTGTCATCTTTCATGCAGATAAGGAAACAGCT 3307568 Score = 87.8 bits (96), Expect = 2e-12 Identities = 100/132 (76%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 36158 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 36217 || ||||| |||||||| ||||||||||| | || | |||||||| || ||||| Sbjct 1132698 CAGGCGAAGTCGCAGTGGAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGG 1132639 Query 36218 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAA 36276 || ||||| || || ||||| || ||||| || |||| |||| ||||| || || ||||| Sbjct 1132638 CCCGGCATGAGTCCGCGCTTCTTGAGCCAGAAGATGG-CGCAGAATGAACCCGAGAAGAA 1132580 Query 36277 AATTCCTTCTAC 36288 || || || || Sbjct 1132579 GATCCCCTCGAC 1132568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658172701274080