Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq9 167 3e-36 >seq9 Length=31548187 Score = 167 bits (184), Expect = 3e-36 Identities = 397/587 (68%), Gaps = 21/587 (4%) Strand=Plus/Plus Query 124996 TGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTT 125055 |||| || |||||||| | | || ||||| | ||||| ||||| ||| || || | Sbjct 1132122 TGTTCCCGATCAGGTACCCGCAGATCTGGGAGTTCTACAAGAAGGCGGTGGCGTCGTTCT 1132181 Query 125056 GGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGA-GACTCGTTTGACT 125114 |||||| || ||||| || || ||| ||| | | | ||||| | | || | | Sbjct 1132182 GGACGGCGGAGGAGGTGGACCTCTCCGCCGACGCGCGCCACTGGGATGCCGCGCTGTCGT 1132241 Query 125115 GAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATC 125174 || ||||| | || | || ||| | | |||||||| |||| |||||| || ||| Sbjct 1132242 CCGAC-GAGCGCCACTTCGTCTCCCACGTGCTCGCCTTCTTCGCCGCCTCCGACGGCATC 1132300 Query 125175 GTCAACGACAATCTGTTGACACGATTC-TCTCAAGAGTTGACCATTCCAGAGGTGTCGTG 125233 || ||| || || | | ||| | || || || | | |||| | || | Sbjct 1132301 GTGCTCGAGAACCTCGCCTCCAGGTTCATGTCC-GACGTGCAGGTCGCCGAGGCG-CGCG 1132358 Query 125234 CTTT-TACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGA 125292 | || ||||| ||||| ||| || |||||| | |||||||| |||||||| ||| Sbjct 1132359 CCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCACTCGGAGATGTACTCGCTTCTGC 1132418 Query 125293 TTGACATGTACATTCGCGATCCGCAACGT----AAACACATGCTCTTTAACGCAATCGAC 125348 | || | |||||| ||||| | |||| || || ||||| ||| |||||| Sbjct 1132419 TCGAGACGTACATCCGCGA----CGACGTCGAGAAGGACCGCCTCTTCCGCGCCATCGAC 1132474 Query 125349 ACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAG 125408 || || || | | || ||||| | |||| || || |||||||| | || | || Sbjct 1132475 ACCGTCCCCGCCGTGCGCCGCAAGGCCGACTGGGCCATGCGATGGATCGACGGCGGCGAG 1132534 Query 125409 T-CTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG 125467 ||||| |||| | || || || |||||| ||| ||||| |||||||| ||||| Sbjct 1132535 CGCTTCG----CCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGGATCTTCTTCTCGGG 1132590 Query 125468 TAGTTT-TGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACA 125526 | || |||| ||||||| |||||||||||||||||||||||||| || || || | Sbjct 1132591 TTCATTCTGCG-CCATCTTCTGGCTCAAGAAGCGCGGACTCATGCCGGGCCTCACCTTCT 1132649 Query 125527 GTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCC 125573 |||||| | || || || |||||||| || ||||| ||||| ||| Sbjct 1132650 CCAACGAGCTCATCTCCCGCGACGAGGGTCTCCACTGCGACTTCGCC 1132696 Score = 93.3 bits (102), Expect = 6e-14 Identities = 260/396 (66%), Gaps = 15/396 (4%) Strand=Plus/Minus Query 125478 GCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTT 125537 |||||||| |||||||||||||| || |||||||| || || || | |||||| | Sbjct 8707695 GCCATCTTCTGGCTCAAGAAGCGGGGGCTCATGCCGGGCCTCACCTTCTCCAACGAGCTC 8707636 Query 125538 ATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTG 125597 || || || ||||||||||| ||||| ||||| ||| || || | || | || Sbjct 8707635 ATCTCCCGCGACGAGGGCCTGCACTGCGACTTCGCCTGCCTCCT------CTACGACCTC 8707582 Query 125598 CGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGG 125657 | ||| | || || | ||| | ||| | | || || |||| ||||| Sbjct 8707581 C--TCCGCGGCAAGCTCGA-CGAGGCGCGCGTCCGCGAGATCGTCGCCGACGCCGTCGAC 8707525 Query 125658 ATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAG 125717 || || ||||| | ||| | || || ||| | | ||||||||| || | Sbjct 8707524 ATCGAGAGGGAGTTCGTCTGCGACGCGCTCCCCGTCGCGCTCGTCGGCATGAACGGCGAC 8707465 Query 125718 CTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGCCGC 125777 || ||| || ||||||| ||||| || || || || || || | | | | ||| || Sbjct 8707464 CTCATGAGCCAGTACATCGAGTTCGTCGCCGACCGCCTCCT---CATGGCGCTCGGCTGC 8707408 Query 125778 ---AAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGT 125834 ||||| ||||||| | || ||||| || | ||| ||| || || |||| Sbjct 8707407 AAGAAGATGTACAACGTCGCCAACCCCTTCGACTGGATGGAGCTCATCTCCCTGCAGGGC 8707348 Query 125835 AAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870 ||||||||||| ||||||||| ||| |||| ||| Sbjct 8707347 AAGACCAACTTCTTCGAGAAGCGCGTCGGCGACTAC 8707312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741059088841120