Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq6 118 9e-22 >seq6 Length=37594838 Score = 118 bits (130), Expect = 9e-22 Identities = 168/234 (72%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 5501 ACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCT 5560 ||||| ||||| ||||| || || | || || | || |||| ||| | ||||||| Sbjct 27698046 ACGCCGGTGGATCCGAACCCTCCCTCTCCCCTGACGGTGGCGTCGAGGTCCTCCACCTCG 27698105 Query 5561 TCCACATCGGGGAACGC-AGCGCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTT 5619 | || || || | | | | | |||| ||||| |||||| || |||||||| | ||| Sbjct 27698106 GCGACCTCCGGCGTCACGATCAC-CTCGATGATCATCTGCGCGATCCGGTCGCCGGGCTT 27698164 Query 5620 TACCTCGAAATCGTTGTGGCCGAAGTTGAACAGCACCACGCCCACGTTGCCGCGGTAGTC 5679 || |||| ||| ||| | | |||||| || | || || || ||| |||||||| Sbjct 27698165 CACGGCGAAGTCGGTGTCGGAGTGGTTGAAGAGGATGACCCCTACCGGGCCACGGTAGTC 27698224 Query 5680 GGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGA 5733 |||||| ||||| || |||||||||||||| ||||||| | |||||| || || Sbjct 27698225 GGCGTCGATCACCCCGGCGCCCACGTCGATCGAGTGCTTCAACGCCAGCCCAGA 27698278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430054337104544