Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq8 102 7e-17 seq11 89.7 4e-13 seq9 89.7 4e-13 seq1 87.8 2e-12 >seq8 Length=30429317 Score = 102 bits (112), Expect = 7e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 48511 CCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTC 48570 ||| | ||||| ||||| || |||||| || || ||||| ||||||| || | Sbjct 9003146 CCTGAGCACTAGGTGAAGGGTAGACTCCTTCTGGATATTGTAGTCAGCCAGGGTGCGTCC 9003205 Query 48571 GTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTT 48630 |||||| |||||||| ||| || | || | |||||||| ||| || | | ||||| Sbjct 9003206 GTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTT 9003265 Query 48631 GTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTAT 48690 |||| ||| ||| ||| | | | || ||||| | |||||| ||| | || || Sbjct 9003266 GTCCTGAATCTTCGCCTTCACATTGTCGATTGTATCAGAAGACTCGACCTCAAGCGTAAT 9003325 Query 48691 GGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| || ||||| || || || |||||||||||||| Sbjct 9003326 GGTCTTTCCGGTCAGGGTCTTGACAAAAATCTGCAT 9003361 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 ||||| | || ||| | ||| | ||||| ||| ||| || |||||||||||||| || Sbjct 9003363 CCTCCCCTCAGCCTAAGCACAAGGTGAAGGGTGGACTCTTTCTGAATGTTGTAATCTGCG 9003422 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 | ||| ||||||| || ||||| || | | || | |||||||| || || Sbjct 9003423 AGGGTGCGCCCGTCCTCAAGTTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTCAGGTGGA 9003482 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679 | || ||||||||| ||| || ||||| | | || || || | ||||| | Sbjct 9003483 ATACCCTCCTTGTCCTGAATCTTGGCCTTGACATTGTCAATCGTGTCAGAGGACTCAACC 9003542 Query 48680 TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 || | |||||||| || || ||||| || |||||||| ||||||||| Sbjct 9003543 TCTAGGGTTATGGTCTTGCCAGTGAGTGTCTTCACAAAGATCTGCATC 9003590 >seq11 Length=27185770 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/214 (71%), Gaps = 6/214 (3%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCT 48575 ||| | ||| || ||| |||||| ||||||||||| |||| ||| || || | |||| Sbjct 4344612 CACAAGATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCAG-CAAGGGTGCGTCCTTCCT 4344670 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 | |||||||| ||| || | || | |||||||| || || | | ||||||||| Sbjct 4344671 CGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCAGGAGGGATCCCCTCCTTGTCCT 4344730 Query 48636 TAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGT 48693 || ||| ||| | | | || ||||| || | |||||| ||| | || |||| Sbjct 4344731 GGATCTTCGCCTTCACGTTGTCG--ATGGTGTCCGAGGACTCCACCTCAAGGGTGATGGA 4344788 Query 48694 TTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 || ||||| || || |||||||| ||||||||| Sbjct 4344789 CTTGCCGGTCAGGGTCTTCACAAAGATCTGCATC 4344822 >seq9 Length=31548187 Score = 89.7 bits (98), Expect = 4e-13 Identities = 144/205 (70%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 ||||| ||| |||||| || |||||||| |||||||| || | |||||||||||| Sbjct 28897732 TGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCCAAGGTGCGGCCATCCTCCAGCTGC 28897673 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| || | || | ||||||||| ||| || | || ||||||||| || || Sbjct 28897672 TTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTG 28897613 Query 48644 TGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701 ||| | | | || || || || | ||||| ||| | || ||||| || |||| Sbjct 28897612 GCCTTCACGTTGTCG--ATCGTGTCCGAGGACTCGACCTCAAGCGTGATGGTCTTGCCGG 28897555 Query 48702 TGAGAGTTTTCACAAAAATCTGCAT 48726 | || || || || || |||||||| Sbjct 28897554 TCAGGGTCTTGACGAAGATCTGCAT 28897530 >seq1 Length=46529941 Score = 87.8 bits (96), Expect = 2e-12 Identities = 135/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || |||||||| || |||| ||| |||||||||||||||| ||| || | Sbjct 27877929 CTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGCCCGTCCTCCAGCTGCTTGCCGGCGAA 27877870 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | |||||||| ||| ||| | | ||||||||| | ||| |||||| Sbjct 27877869 GATGAGCCGCTGCTGGTCCGGCGGGATCCCCTCCTTGTCCTGCACCTTCGCCTTGATGTT 27877810 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | || || ||| | |||| ||| | || ||||| || || || || || ||||| Sbjct 27877809 CTGGATCGTGTCGCTGCTCTCCACCTCCAGCGTGATGGTCTTCCCCGTCAGGGTCTTCAC 27877750 Query 48715 AAAAATCTGCATC 48727 || ||||||||| Sbjct 27877749 GAAGATCTGCATC 27877737 Score = 82.4 bits (90), Expect = 6e-11 Identities = 138/198 (70%), Gaps = 4/198 (2%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || |||||||| || || | ||| |||||||||||||||| ||| || | Sbjct 14154222 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGCCCGTCCTCCAGCTGCTTGCCGGCGAA 14154281 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TA 48652 || | |||||||| || ||| | | ||||||||| || ||| ||| | | Sbjct 14154282 GATGAGCCGCTGCTGGTCGGGCGGGATCCCCTCCTTGTCCTGGATCTTCGCCTTCACGTT 14154341 Query 48653 GACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTC 48712 | || ||||| || | |||||| ||| | || || || || || || || || ||| Sbjct 14154342 GTCG--ATGGTGTCCGAGGACTCCACCTCCAGCGTGATCGTCTTCCCCGTCAGGGTCTTC 14154399 Query 48713 ACAAAAATCTGCATCGTG 48730 || || ||||||||| || Sbjct 14154400 ACGAAGATCTGCATCTTG 14154417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421251138392012