Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq11 116 2e-21 seq12 113 2e-20 seq10 113 2e-20 seq1 113 2e-20 seq8 107 1e-18 seq5 105 3e-18 seq7 104 1e-17 seq6 104 1e-17 >seq11 Length=27185770 Score = 116 bits (128), Expect = 2e-21 Identities = 84/95 (88%), Gaps = 2/95 (2%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 |||||||||| || |||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 22868119 AATAAAAAAT-AATTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 22868061 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC-GTCGA 11534 |||||||| |||| |||||||||| |||| ||||| Sbjct 22868060 GACGCTCTAACCAGCTGAGCTAATAGGCCAGTCGA 22868026 Score = 105 bits (116), Expect = 3e-18 Identities = 77/90 (86%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 11443 TAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 |||||||| | ||||||||| | | |||||||| ||||||||||||||||||||||| Sbjct 19352491 TAAAAAATTTTAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGA 19352550 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCCGTC 11532 |||||| |||| |||||||||| |||| || Sbjct 19352551 CGCTCTAACCAGCTGAGCTAATAGGCCATC 19352580 >seq12 Length=23490084 Score = 113 bits (124), Expect = 2e-20 Identities = 76/86 (88%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||| |||||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 18399302 AAAAAATAGAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 18399243 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||| |||||||||| |||| Sbjct 18399242 GCTCTAACCAGCTGAGCTAATAGGCC 18399217 Score = 109 bits (120), Expect = 3e-19 Identities = 81/94 (86%), Gaps = 1/94 (1%) Strand=Plus/Plus Query 11437 AATTAATAAAA-AATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATT 11495 || |||||||| || ||| ||||||||| | | |||||||| |||||||||||||||| Sbjct 14502767 AACTAATAAAACAAAAAAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATT 14502826 Query 11496 AGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| |||||||||| |||| Sbjct 14502827 AGCACGACGCTCTAACCAGCTGAGCTAATAGGCC 14502860 >seq10 Length=28350858 Score = 113 bits (124), Expect = 2e-20 Identities = 75/84 (89%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 ||||| ||| ||||||||| | | |||||||| |||||||||||||||||||||||||| Sbjct 25100694 AAAATTAAAGTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGC 25100635 Query 11506 TCTRACCAACTGAGCTAATGGGCC 11529 ||| ||||||||||||||| |||| Sbjct 25100634 TCTAACCAACTGAGCTAATAGGCC 25100611 >seq1 Length=46529941 Score = 113 bits (124), Expect = 2e-20 Identities = 78/89 (88%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || ||||||| ||| ||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 46282010 AACAAAAAATAAAACTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 46282069 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||| |||||||||| |||| Sbjct 46282070 GACGCTCTAACCAGCTGAGCTAATAGGCC 46282098 Score = 104 bits (114), Expect = 1e-17 Identities = 75/86 (87%), Gaps = 1/86 (1%) Strand=Plus/Minus Query 11445 AAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||| ||| ||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 37546698 AAAAATAAAAGGTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 37546639 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||| |||||||||| |||| Sbjct 37546638 GCTCTAACCAGCTGAGCTAATAGGCC 37546613 Score = 104 bits (114), Expect = 1e-17 Identities = 76/89 (85%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 |||||||| || ||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 42408814 AATAAAAACAAAAGGTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 42408755 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||| |||||||||| |||| Sbjct 42408754 GACGCTCTAACCAGCTGAGCTAATAGGCC 42408726 Score = 102 bits (112), Expect = 4e-17 Identities = 73/85 (86%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| || ||||||||| | | |||||||| ||||||||||||||||||||||||| Sbjct 37568866 AAAAAAAAAGGTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACG 37568807 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||| |||||||||| |||| Sbjct 37568806 CTCTAACCAGCTGAGCTAATAGGCC 37568782 Score = 100 bits (110), Expect = 1e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 28490310 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 28490369 Query 11516 TGAGCTAATGGGCCGTC 11532 ||||||||| |||| || Sbjct 28490370 TGAGCTAATAGGCCATC 28490386 >seq8 Length=30429317 Score = 107 bits (118), Expect = 1e-18 Identities = 78/91 (86%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 11439 TTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 |||| ||||| | ||||||||||| | | |||||||| ||||||||||||||||||| Sbjct 23966559 TTAAAAAAAAGATAGATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGC 23966618 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||| |||| |||||||||| |||| Sbjct 23966619 ACGACGCTCTAACCAGCTGAGCTAATAGGCC 23966649 >seq5 Length=38039368 Score = 105 bits (116), Expect = 3e-18 Identities = 78/91 (86%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 11441 AATAAAAAATC--AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 |||| ||||| ||| ||||||||| | | |||||||| ||||||||||||||||||| Sbjct 23547754 AATAGAAAATTTAAAACTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGC 23547695 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||| |||| |||||||||| |||| Sbjct 23547694 ACGACGCTCTAACCAGCTGAGCTAATAGGCC 23547664 >seq7 Length=32884216 Score = 104 bits (114), Expect = 1e-17 Identities = 76/88 (86%), Gaps = 1/88 (1%) Strand=Plus/Plus Query 11444 AAAAAATCAA-ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 || |||| || | ||||||||| | | |||||||| ||||||||||||||||||||||| Sbjct 22980191 AATAAATAAATAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGA 22980250 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||| |||| |||||||||| ||||| Sbjct 22980251 CGCTCTAACCAGCTGAGCTAATAGGCCG 22980278 Score = 104 bits (114), Expect = 1e-17 Identities = 74/85 (87%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 11447 AAATCAAAT--TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||| ||||| ||||||||||| | |||||||| |||||||||||||||||| |||||| Sbjct 23180241 AAAACAAATAATGGCCCATGAAGGTCTCGAACCTGCGACCTTCGCGTTATTAGTACGACG 23180182 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||| |||||||||| |||| Sbjct 23180181 CTCTAACCAGCTGAGCTAATAGGCC 23180157 Score = 102 bits (112), Expect = 4e-17 Identities = 74/86 (86%), Gaps = 3/86 (3%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||| | ||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 22449534 AAAAAATTA---TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 22449590 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||| |||||||||| |||| Sbjct 22449591 GCTCTAACCAGCTGAGCTAATAGGCC 22449616 Score = 91.5 bits (100), Expect = 8e-14 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 11471 TCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| ||||||||||||||||||||||||||||| |||| |||||||||| |||| Sbjct 20864170 TCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGCTGAGCTAATAGGCC 20864112 >seq6 Length=37594838 Score = 104 bits (114), Expect = 1e-17 Identities = 74/85 (87%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| ||| ||||||||| | | |||||||| ||||||||||||||||||||||||| Sbjct 15582167 AAAAA--AAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACG 15582224 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||| |||||||||| |||| Sbjct 15582225 CTCTAACCAGCTGAGCTAATAGGCC 15582249 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261491161756912