Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= NC_006820.1 Length=196280 Score E Sequences producing significant alignments: (Bits) Value seq4 293 3e-74 >seq4 Length=26741765 Score = 293 bits (324), Expect = 3e-74 Identities = 310/403 (77%), Gaps = 4/403 (1%) Strand=Plus/Minus Query 135713 GAGTGGGAACTCTCTTACCGACTGGGTATGCGCCCTTGGATTTGTGTCGCTTACTCAGCC 135772 ||||||||||| || || |||||||| || ||||||||| ||| || || ||||| Sbjct 188885 GAGTGGGAACTGAGTT-CCATCTGGGTATACGTCCTTGGATTACTGTTGCATATTCAGCT 188827 Query 135773 CCTGTTGCCGCTGCTACTGCTGTTTTCCTGGTCTACCCCTTTGGACAAGGTTCTTTCAGT 135832 |||||||| |||||||| ||||||||| || | ||||| |||| ||||| |||| | Sbjct 188826 CCTGTTGCAGCTGCTACCGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTCT 188767 Query 135833 GATGGTATGCCGCTTGGCATTTCTGGAACTTTTAACTACATGCTTGTTTTCCAGGCAGAA 135892 ||||||||||| | || || ||| | ||||| |||| ||| |||| ||||||||||| Sbjct 188766 GATGGTATGCCTTTAGGAATATCTTGTACTTTCAACTTTATGATTGTATTCCAGGCAGAG 188707 Query 135893 CACAACATTCTCATGCATCCTTTCCACATGTTGGGAGTTGCTGGGGTCTTCGGTGGTTCT 135952 || ||||| || |||||||| || |||||||| || || ||||| || || | ||||| Sbjct 188706 CATAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTATGCGGTTCC 188647 Query 135953 CTGTTC-TCTGCTATGCATGGATCTCTTGTCACCTCTAGTCTTGTAC-GTGAGACGACTG 136010 || ||| |||||||||||| ||| | || ||||||||| |||| | | || || |||| Sbjct 188646 CTATTCAAGTGCTATGCATGGTTCTTTGGTAACCTCTAGT-TTGTTCAGGGAAACCACTG 188588 Query 136011 AGGTAGAATCCCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACTTACAACATTG 136070 | ||||| || | ||||||| || |||||||| ||||||||||| || |||| Sbjct 188587 AAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAGACTTATAATATTG 188528 Query 136071 TTGCTGCTCATGGTTACTTCGGTCGTCTGATCTTCCAATATGC 136113 | || ||||||||||| || || || | |||||||||||||| Sbjct 188527 TGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGC 188485 Score = 206 bits (228), Expect = 3e-48 Identities = 224/297 (75%), Gaps = 0/297 (0%) Strand=Plus/Plus Query 136031 GGTTACAAGTTCGGTCAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGTTACTTC 136090 ||||||| || |||||||| ||||||||||| || ||||| || ||||||||||| || Sbjct 12116249 GGTTACAGATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTT 12116308 Query 136091 GGTCGTCTGATCTTCCAATATGCGTCGTTCAACAACTCTCGTTCGCTACACTTTTTCCTT 136150 || || | |||||||||||||| || |||||||||||||| ||||||| ||| | Sbjct 12116309 GGCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTG 12116368 Query 136151 GCTGCTTGGCCTGTTGTCGGTATCTGGTTTGCTGCCCTGGGCGTATCTACGATGGCGTTC 136210 |||||||||||||| || || || ||||| |||| | || | ||| ||||| ||| Sbjct 12116369 GCTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTC 12116428 Query 136211 AACCTCAATGGATTCAACTTCAACCAGTCCATTGTATCTTCTGAAGGTCGTGTACTCAAC 136270 || || || |||||||| |||||||| || | || | ||||||| || | || Sbjct 12116429 AATCTAAACGGATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAAT 12116488 Query 136271 ACCTGGGCAGATGTGCTGAATCGTGCTGGTCTGGGTATGGAGGTGATGCACGAGCGT 136327 || ||||| ||| | | || |||||| ||| |||||||| || |||||||| ||| Sbjct 12116489 ACTTGGGCTGATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGT 12116545 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627967905804800