Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq4 217 4e-52 >seq4 Length=26741765 Score = 217 bits (240), Expect = 4e-52 Identities = 266/359 (74%), Gaps = 3/359 (1%) Strand=Plus/Minus Query 19674 GTAGCATATACAGCACCACTATCAGCAGCTCTTGCTGTGTTTCTCG-TTTACCCATTTGG 19732 || |||||| |||| || | |||| ||| ||||| ||||| | ||||||| |||| Sbjct 188841 GTTGCATATTCAGCTCCTGTTGCAGCTGCTACCGCTGT-TTTCTTGATTTACCCTATTGG 188783 Query 19733 GCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTT 19792 ||||| ||||| ||||||||||||| | || || ||| ||||||| ||||||||| | Sbjct 188782 TCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTTGTACTTTCAACTTTATGAT 188723 Query 19793 CGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGG 19852 |||||||| ||||| || || |||||||||||||| || |||||| | ||||| ||||| Sbjct 188722 TGTATTCCAGGCAGAGCATAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGG 188663 Query 19853 CGTATTCGGTGGATCTCTTTTC-TCTGCTATGCACGGAAGTTTGGTTACTTCCTCGATCA 19911 ||||| | || || || ||| ||||||||| || |||||| || || | Sbjct 188662 TGTATTATGCGGTTCCCTATTCAAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGT 188603 Query 19912 TCAAGGAAACAACTGAGGATGTATCGCAGAACTATGGCTATAAGTTCGGGCAAGATGAAG 19971 ||| |||||| ||||| | | ||| || | || || | || || ||||| |||| Sbjct 188602 TCAGGGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAG 188543 Query 19972 AGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTGATATTTCAATATGCT 20030 |||| ||||||||||| || || || || || ||||| |||| || || ||||||||| Sbjct 188542 AGACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCT 188484 Score = 181 bits (200), Expect = 3e-41 Identities = 231/318 (73%), Gaps = 0/318 (0%) Strand=Plus/Plus Query 19956 TTCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTG 20015 || || ||||| |||||||| ||||||||||| || || || || || ||||| |||| Sbjct 12116258 TTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTA 12116317 Query 20016 ATATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGCTACTTTC 20075 || || ||||||||| ||| || || |||||||||||||| ||||| | ||| ||| Sbjct 12116318 ATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGG 12116377 Query 20076 CCCGTGGTTGGCATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCAACCTTAAT 20135 || || || || || ||| | || | | || || | |||||||||||||| || || Sbjct 12116378 CCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAAC 12116437 Query 20136 GGTTTTAACTTTAACCAGTCAGTAGTTGATGTCAACGGAAAGATAATCCCAACATGGGCT 20195 || || || || ||||| || ||||||||| | | || | || || |||||| Sbjct 12116438 GGATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCT 12116497 Query 20196 GATGTATTAAATAGAGCTAACCTCGGATTTGAAGTTATGCACGAGCGCAATGCTCATAAC 20255 ||| | | || | ||||| || || | ||||| |||||||| || |||||||| ||| Sbjct 12116498 GATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAAC 12116557 Query 20256 TTCCCACTTGATTTAGCT 20273 ||||| || || ||||| Sbjct 12116558 TTCCCTCTAGACCTAGCT 12116575 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144441579417072