Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= NC_006884.2 Length=178249 Score E Sequences producing significant alignments: (Bits) Value seq4 219 5e-52 seq1 100 3e-16 >seq4 Length=26741765 Score = 219 bits (242), Expect = 5e-52 Identities = 241/318 (76%), Gaps = 2/318 (1%) Strand=Plus/Plus Query 171332 TTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGGTAGATTA 171391 || || ||||| ||||| || ||||| ||||| || |||||||| || || || ||||| Sbjct 12116258 TTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTA 12116317 Query 171392 ATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGCTGTATTC 171451 |||||||| ||||| || |||||||||||||| |||||||||||| | |||| | Sbjct 12116318 ATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGG 12116377 Query 171452 CCTGTAGTCTGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAACCTTAAC 171511 |||||||| | | ||||| || || | ||||| |||| ||||| ||||| || ||| Sbjct 12116378 CCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAAC 12116437 Query 171512 GGATTCAACTTCAACCAATCAGTTGTAGAT-GCAAACGGAAAGATTGTACCAACATGGGG 171570 |||||||| ||||||||||| || || ||| || || || || | || |||| Sbjct 12116438 GGATTCAATTTCAACCAATCTGTAGTTGATAGCCAA-GGTCGCGTTATTAATACTTGGGC 12116496 Query 171571 AGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAATGCACACAA 171630 ||| | | ||| | || || ||||| |||||||| ||||| ||| | ||||| ||||| Sbjct 12116497 TGATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAA 12116556 Query 171631 CTTCCCACTAGACCTAGC 171648 |||||| ||||||||||| Sbjct 12116557 CTTCCCTCTAGACCTAGC 12116574 Score = 194 bits (214), Expect = 2e-44 Identities = 265/369 (72%), Gaps = 1/369 (0%) Strand=Plus/Minus Query 171038 CCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGCAGTATTCCTTGTG 171097 |||||||| ||| ||||| ||||| ||||| | || || || || ||| | | Sbjct 188853 CCTTGGATTACTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACCGCTGTTTTCTTGATT 188794 Query 171098 TATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTC 171157 || || | ||||| || ||||||||||||||||| |||| || || |||| ||| Sbjct 188793 TACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTTGTACTTTC 188734 Query 171158 AACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCCCTTCCATATGGCA 171217 ||||| ||| | || ||||| ||||| || ||||| || ||||| || || || ||| | Sbjct 188733 AACTTTATGATTGTATTCCAGGCAGAGCATAACATCCTTATGCATCCATTTCACATGTTA 188674 Query 171218 GGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTC-AGTGCAATGCACGGTTCTCTAGTGAC 171276 |||||||| ||| | || | ||| || ||| ||||| ||||| |||||| | || || Sbjct 188673 GGTGTAGCTGGTGTATTATGCGGTTCCCTATTCAAGTGCTATGCATGGTTCTTTGGTAAC 188614 Query 171277 ATCTTCTCTAATCAGAGAGACAACTGAGAACGAGAGTCAAAACTACGGCTATAAGTTCGG 171336 ||| | | |||| || || ||||| ||||| | || | || || | || || Sbjct 188613 CTCTAGTTTGTTCAGGGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGG 188554 Query 171337 ACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGGTAGATTAATCTT 171396 ||||| ||||| || ||||| ||||| || |||||||| || || || |||||||||| Sbjct 188553 TCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTT 188494 Query 171397 CCAGTATGC 171405 ||| ||||| Sbjct 188493 CCAATATGC 188485 >seq1 Length=46529941 Score = 100 bits (110), Expect = 3e-16 Identities = 139/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 171795 TTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 171854 ||||| || | || || |||||| || || ||||| || || | ||||||||||| Sbjct 26428812 TTTGATATTATGGACGACTGGTTACGAAGGGACCGTTTTGTTTTTGTAGGATGGTCTGGC 26428753 Query 171855 CTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACTTTC 171914 || || ||||| ||||||||||| | || | ||||||||||| ||| || ||||| Sbjct 26428752 CTATTGCTTTTTCCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTT 26428693 Query 171915 GTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAGCAAACTTTTTA 171974 || || || ||||| || ||||| | || || ||| | || || || || ||| Sbjct 26428692 GTAACTTCTTGGTATACCCATGGATTGGCGAGTTCCTATTTGGAAGGTTGCAATTTCTTA 26428633 Query 171975 ACTGCAGCAGTATCA 171989 || |||||||| ||| Sbjct 26428632 ACCGCAGCAGTTTCA 26428618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570268714459680