Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq5 98.7 3e-15 seq6 95.1 3e-14 seq9 93.3 1e-13 seq3 84.2 6e-11 >seq5 Length=38039368 Score = 98.7 bits (108), Expect = 3e-15 Identities = 157/220 (71%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACT-TAAGAATTGTGCTCTTATTTC 363680 ||||| || ||| ||| ||||| || | ||| || || | ||||| ||||| || Sbjct 36491025 ATGAAAGATGATAGCATTGAGGGAATTTATGATACTCTCTCAGAAT-GTGCTACCATAAG 36491083 Query 363681 CAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGTTACA 363739 ||| ||| || ||||||||| | || || |||||| || | || || | ||||||| Sbjct 36491084 CAAATGTGCTGGTGGAATTGGTCTCTCAATTCACAATATTAGAGCTACTGGG-AGTTACA 36491142 Query 363740 TTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATA 363799 |||| || ||| ||| || |||||| | ||||||||||| ||||| || | ||| Sbjct 36491143 TTCGAGGAACAAATGGAACATCTAATGGGATTGTTCCCATGCTGCGTGTTTTCAATGATA 36491202 Query 363800 CTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGG 363839 |||| | || || || || |||||||| ||| | ||||| Sbjct 36491203 CTGCACGTTATGTTGATCAAGGTGGAGGCAAGAGAAAAGG 36491242 >seq6 Length=37594838 Score = 95.1 bits (104), Expect = 3e-14 Identities = 131/183 (72%), Gaps = 8/183 (4%) Strand=Plus/Minus Query 371100 GCACCATGACTAATGATGGAATCCTTCTCCATCTCACCAATTCGGAGACCACCATCGCGT 371159 || |||||| ||| || | ||| |||||||||| |||| |||||||||||||||||| Sbjct 26776221 GCGCCATGAGCAATCATACAGTCCCTCTCCATCTCTCCAAACCGGAGACCACCATCGCGT 26776162 Query 371160 GACCGTCCTTCTGTTGGCGCGCGTGTAAGTAGCTGTTGTGCACCGCGG----TTGCGTGC 371215 || || || |||| || | ||||||| ||| | ||| ||| | | ||| Sbjct 26776161 GAGCGCCCCTCTGCAGGTTGTCTGGTAAGTATCTGCACAGGACCACGGCCTCTAGAGTGA 26776102 Query 371216 ATGTGACTTGTCAACTACCATGTGCTTGAGGCGCTGATAATAACACGGAGCAATAAAAAT 371275 || ||||||| | ||||||||||| || | ||| |||||| ||| ||| ||||| Sbjct 26776101 AT----CTTGTCATCCACCATGTGCTTAAGTCTCTGGTAATAAGTAGGACCAAGGAAAAT 26776046 Query 371276 CAT 371278 ||| Sbjct 26776045 CAT 26776043 >seq9 Length=31548187 Score = 93.3 bits (102), Expect = 1e-13 Identities = 155/220 (70%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCC 363681 ||||| || || ||| ||||| |||| ||| || | ||| | |||||| | || | Sbjct 3307550 ATGAAAGATGACAGCATTGAGGGAATCTATGATACTTTGAAGGAATGTGCTGTCATAAGC 3307491 Query 363682 AAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGTTACAT 363740 || ||| || ||||||||||| || | |||||| |||| || || | || || || Sbjct 3307490 AAATCTGCTGGAGGAATTGGTGTCTCAGTTCACAATATTCGAGCTACTG-GGAGCTATAT 3307432 Query 363741 TCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATAC 363800 || || ||| ||| ||| |||||| | ||||| ||||| ||||| || | |||| Sbjct 3307431 CCGTGGAACAAATGGAACCTCCAATGGGATTGTTCCTATGCTACGTGTTTTCAATGATAC 3307372 Query 363801 TGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGG 363840 ||| | || || || || |||||||| ||| | |||||| Sbjct 3307371 TGCCCGTTATGTTGATCAAGGTGGAGGCAAGAG-AAAGGG 3307333 >seq3 Length=27098305 Score = 84.2 bits (92), Expect = 6e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 111701 CCAGTTTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATAT 111760 |||||||||||| | |||| ||| || ||||| |||||||| || ||||||||||| Sbjct 16356701 CCAGTTTTATGTTGAGAGCGGGGAGCTATCGTGCCAGATGTATCAACGCTCTGCTGATAT 16356760 Query 111761 TGGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCA 111820 || ||||||||||| || || |||||| || | || || || | | | || ||||| Sbjct 16356761 GGGACTTGGTGTTCCATTCAACATTGCATCATATTCTCTTCTGACATACATGATTGCTCA 16356820 Query 111821 TTTT 111824 | || Sbjct 16356821 TGTT 16356824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303353399609384