Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= NC_008296.2 Length=177300 Score E Sequences producing significant alignments: (Bits) Value seq4 307 1e-78 seq5 132 5e-26 seq11 107 2e-18 seq1 96.9 4e-15 >seq4 Length=26741765 Score = 307 bits (340), Expect = 1e-78 Identities = 284/360 (79%), Gaps = 0/360 (0%) Strand=Plus/Plus Query 166681 GAGACCACTGAAACTGAGTCTCAAAACTATGGTTACAAGTTTGGTCAAGAAGAAGAGACC 166740 || |||||||||| || ||| || | ||||||| ||||||||||| |||||||| Sbjct 12116219 GAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAGACT 12116278 Query 166741 TACAACATCGTGGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCTTC 166800 || || || ||||| ||||||||||| || || || | ||||||||||| ||| || Sbjct 12116279 TATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTTT 12116338 Query 166801 AACAACTCTCGCTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTT 166860 ||||||||||| || | ||||||||| | || || |||||||| || || || ||||| Sbjct 12116339 AACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATTTGGTTC 12116398 Query 166861 ACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCC 166920 |||||| | ||| |||| || ||||| ||||| || ||||| ||||| |||||||| || Sbjct 12116399 ACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTCAACCAATCT 12116458 Query 166921 ATCATCGATGGTCAGGGTCGTGTGCTCAACACTTGGGCAGATGTCCTCAACCGTGCTGGT 166980 | | ||| | || ||||| || | || |||||||| ||| || ||||||||||| | Sbjct 12116459 GTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGTGCTAAT 12116518 Query 166981 CTGGGTATGGAAGTAATGCACGAGCGTAATGCTCACAACTTCCCTCTGGATCTTGCTGCT 167040 || |||||||||||||||||||| ||||||||||||||||||||||| || || |||||| Sbjct 12116519 CTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCT 12116578 Score = 233 bits (258), Expect = 2e-56 Identities = 298/405 (74%), Gaps = 4/405 (1%) Strand=Plus/Minus Query 166392 TGAATGGGAATTGTCTTACCGCCTCGGTATGCGTCCTTGGATTTGCGTAGCATACTCTGC 166451 ||| |||||| || || || || ||||| |||||||||||| || ||||| || || Sbjct 188886 TGAGTGGGAACTGAGTT-CCATCTGGGTATACGTCCTTGGATTACTGTTGCATATTCAGC 188828 Query 166452 ACCTGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTC 166511 ||||||||||| || |||| || ||| || | || ||| | |||||||| |||||| Sbjct 188827 TCCTGTTGCAGCTGCTACCGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTC 188768 Query 166512 TGACGCAATGCCCCTGGGTATCAGTGGCACCTTCAACTACATGCTTGTCTTCCAAGCAGA 166571 ||| | ||||| | || || | | || ||||||| ||| |||| ||||| ||||| Sbjct 188767 TGATGGTATGCCTTTAGGAATATCTTGTACTTTCAACTTTATGATTGTATTCCAGGCAGA 188708 Query 166572 GCACAACATCCTCATGCACCCCTTCCATATGCTGGGTGTAGCAGGTGTATTCGGTGGGTC 166631 ||| |||||||| ||||| || || || ||| | |||||||| |||||||| | || || Sbjct 188707 GCATAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTATGCGGTTC 188648 Query 166632 ACTTTTCTCG-GCAATGCACGGCAGTCTCGTTACTTCCTCGCTCG-TCCGTGAGACCACT 166689 || ||| | || ||||| || | | || || | || | | | || | || |||||| Sbjct 188647 CCTATTCAAGTGCTATGCATGGTTCTTTGGTAACCT-CTAGTTTGTTCAGGGAAACCACT 188589 Query 166690 GAAACTGAGTCTCAAAACTATGGTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATC 166749 |||| || ||| || | ||||||| ||||||||||| |||||||| || || || Sbjct 188588 GAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAGACTTATAATATT 188529 Query 166750 GTGGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCT 166794 ||||| ||||||||||| || || || | ||||||||||| ||| Sbjct 188528 GTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCT 188484 >seq5 Length=38039368 Score = 132 bits (146), Expect = 5e-26 Identities = 129/165 (78%), Gaps = 1/165 (1%) Strand=Plus/Minus Query 166855 TGGTTTACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAAC 166914 ||||| |||||| | ||| |||| || ||||| ||||| || ||||| ||||| |||||| Sbjct 16640593 TGGTTCACTGCTTTAGGTATTAGGACTATGGCTTTCAATCTAAACGGGTTCAATTTCAAC 16640534 Query 166915 CAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACACTTGGGCAGATGTCCTCAACCGT 166974 || || | | ||| | || ||||| || | | |||||||| ||| || |||||||| Sbjct 16640533 CA-TCTGTAGTTGATAGCCAAGGTCGCGTTATTTATACTTGGGCTGATATCATCAACCGT 16640475 Query 166975 GCTGGTCTGGGTATGGAAGTAATGCACGAGCGTAATGCTCACAAC 167019 || ||| | |||||||||||||||||| |||||||||||| || Sbjct 16640474 GCAAATCTTGCTATGGAAGTAATGCACGAACGTAATGCTCACCAC 16640430 >seq11 Length=27185770 Score = 107 bits (118), Expect = 2e-18 Identities = 74/84 (88%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 166957 GCAGATGTCCTCAACCGTGCTGGTCTGGGTATGGAAGTAATGCACGAGCGTAATGCTCAC 167016 || ||| || ||||||||||| ||| |||||||||||||||||||| |||||||||||| Sbjct 25910922 GCTGATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCAC 25910863 Query 167017 AACTTCCCTCTGGATCTTGCTGCT 167040 ||||||||||| || || |||||| Sbjct 25910862 AACTTCCCTCTAGACCTAGCTGCT 25910839 >seq1 Length=46529941 Score = 96.9 bits (106), Expect = 4e-15 Identities = 143/199 (72%), Gaps = 8/199 (4%) Strand=Plus/Minus Query 167300 TTTGATGTCCTGGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGA 167359 |||||| | |||| |||||| | | | ||||| ||||| ||||| || |||||||| Sbjct 26428812 TTTGATATTATGGACGACTGGTTACGAAGGGACCGTTTTGTTTTTGTAGGATGGTCTGGC 26428753 Query 167360 TTACTTCTTTTTCCCACTGCTTATCTGGCAATTGGTGGCTGGCTTACTGGCACGACGTTT 167419 || | |||||||| ||||||| | || | || || ||| |||| || || || ||| Sbjct 26428752 CTATTGCTTTTTCCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTT 26428693 Query 167420 GTTACGAGCTGGTATACCCACGGGTTGGCGTCTAGTTAC--CTTG--AGGGTGCTAATTT 167475 || || ||||||||||| || |||||| |||| | ||| ||| ||| ||||| Sbjct 26428692 GTAACTTCTTGGTATACCCATGGATTGGCG---AGTTCCTATTTGGAAGGTTGC-AATTT 26428637 Query 167476 TCTCACGGCAGCAGTGTCA 167494 | || |||||||| ||| Sbjct 26428636 CTTAACCGCAGCAGTTTCA 26428618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 567231914915200