Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq10 89.7 6e-13 seq6 89.7 6e-13 seq9 87.8 2e-12 seq5 87.8 2e-12 seq2 87.8 2e-12 seq3 86.0 7e-12 seq8 84.2 2e-11 seq1 84.2 2e-11 >seq10 Length=28350858 Score = 89.7 bits (98), Expect = 6e-13 Identities = 75/90 (83%), Gaps = 3/90 (3%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 6942895 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGC 6942954 Query 126323 GTGGGTTCGAACCCCACACCTGACA-AATT 126351 |||||||| || ||||| |||||| |||| Sbjct 6942955 GTGGGTTCAAATCCCACTTCTGACATAATT 6942984 >seq6 Length=37594838 Score = 89.7 bits (98), Expect = 6e-13 Identities = 76/93 (82%), Gaps = 2/93 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||| Sbjct 35371976 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGCG 35372035 Query 126324 TGGGTTCGAACCCCACACCTGACAAATTATTAT 126356 ||||||| || ||||| |||||| | | |||| Sbjct 35372036 TGGGTTCAAATCCCACTTCTGACATAATTTTAT 35372068 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/85 (84%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||| Sbjct 3121641 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGCG 3121700 Query 126324 TGGGTTCGAACCCCACACCTGACAA 126348 ||||||| || ||||| ||||||| Sbjct 3121701 TGGGTTCAAATCCCACTTCTGACAA 3121725 >seq9 Length=31548187 Score = 87.8 bits (96), Expect = 2e-12 Identities = 72/87 (83%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGA 126320 || |||||| ||||||||||||||||||||||||| | ||| |||||| | || || | Sbjct 24180996 ACGGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGG 24180937 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 24180936 GCGTGGGTTCAAATCCCACTTCTGACA 24180910 >seq5 Length=38039368 Score = 87.8 bits (96), Expect = 2e-12 Identities = 72/87 (83%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGA 126320 || |||||| ||||||||||||||||||||||||| | ||| |||||| | || || | Sbjct 37423689 ACGGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGG 37423630 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 37423629 GCGTGGGTTCAAATCCCACTTCTGACA 37423603 Score = 82.4 bits (90), Expect = 9e-11 Identities = 79/98 (81%), Gaps = 5/98 (5%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 20574758 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 20574701 Query 126328 TTCGAACCCCACACCTGACAAAT-TATTATTGGAATTT 126364 ||| || |||||| ||| ||| | |||| || ||||| Sbjct 20574700 TTCAAATCCCACAGCTGTCAATTCTATTTTT--AATTT 20574665 >seq2 Length=22967634 Score = 87.8 bits (96), Expect = 2e-12 Identities = 75/92 (82%), Gaps = 2/92 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 |||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 14520987 AGTCAGAATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGC 14520928 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATT 126354 |||||||| || ||||| ||||||| || || Sbjct 14520927 GTGGGTTCAAATCCCACTTCTGACAATTTGTT 14520896 >seq3 Length=27098305 Score = 86.0 bits (94), Expect = 7e-12 Identities = 70/84 (83%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||| Sbjct 675508 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGCG 675567 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 ||||||| || ||||| |||||| Sbjct 675568 TGGGTTCAAATCCCACTTCTGACA 675591 >seq8 Length=30429317 Score = 84.2 bits (92), Expect = 2e-11 Identities = 73/90 (81%), Gaps = 2/90 (2%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 21865485 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 21865542 Query 126328 TTCGAACCCCACACCTGACAAATTATTATT 126357 ||| || |||||| ||| ||| || || || Sbjct 21865543 TTCAAATCCCACAGCTGTCAATTTCTTTTT 21865572 >seq1 Length=46529941 Score = 84.2 bits (92), Expect = 2e-11 Identities = 75/92 (82%), Gaps = 4/92 (4%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 40348376 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 40348319 Query 126328 TTCGAACCCCACACCTG--ACAAATTATTATT 126357 ||| || |||||| ||| |||| ||||| || Sbjct 40348318 TTCAAATCCCACAGCTGTCACAATTTATTCTT 40348287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556860716470880