Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq9 136 3e-27 seq8 122 7e-23 seq7 105 6e-18 seq11 102 7e-17 seq1 102 7e-17 >seq9 Length=31548187 Score = 136 bits (150), Expect = 3e-27 Identities = 153/205 (75%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 22212 TGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGA 22271 |||| ||||||| || ||||| || || | || || || || |||| || || || || Sbjct 28421887 TGTACAGATGCAGATCTTTGTGAAGACACTCACTGGCAAGACCATCACCCTCGAGGTTGA 28421828 Query 22272 AACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACC 22331 || | ||||| | ||| || | || || ||||| ||||||||||| |||||||| Sbjct 28421827 GTCCTCTGATACAATTGACAATGTGAAGGCCAAGATTCAGGACAAGGAGGGCATTCCACC 28421768 Query 22332 CGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGA 22391 || || |||||||| || ||||| ||||| || |||||||| ||||||| || | || Sbjct 28421767 TGACCAGCAACGTCTCATCTTTGCTGGCAAGCAACTAGAGGATGGCCGCACCCTCGCGGA 28421708 Query 22392 TTACAACATTCAAAAAGAATCCACC 22416 ||||||||| || || || |||||| Sbjct 28421707 TTACAACATCCAGAAGGAGTCCACC 28421683 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || || || || || || |||||||||| || || || | Sbjct 28421652 ATGCAGATCTTTGTGAAGACCTTGACAGGAAAGACCATCACTCTTGAGGTCGAGTCCTCG 28421593 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | ||| || | || || ||||| ||||||||||| ||||| || || || Sbjct 28421592 GACAAGATCGACAATGTGAAGGCGAAGATTCAGGACAAGGAGGGAATTCCCCCGGACCAG 28421533 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || ||||| ||||| ||| | |||||| || || | | ||||||||| Sbjct 28421532 CAGCGCCTCATCTTTGCAGGCAAGCAGCTCGAGGATGGACGTACACTGGCTGATTACAAC 28421473 Query 22399 ATTCAAAAAGAATCCACC 22416 ||||| || || |||||| Sbjct 28421472 ATTCAGAAGGAGTCCACC 28421455 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || || |||| ||||| || || || | Sbjct 28897530 ATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACCATCACGCTTGAGGTCGAGTCCTCG 28897589 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | | || || || || |||||||||||||| || || || || Sbjct 28897590 GACACGATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAG 28897649 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || |||||||| ||| | |||||| ||||||| | | || |||||| Sbjct 28897650 CAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACCTTGGCTGACTACAAC 28897709 Query 22399 ATTCAAAAAGAATCCACC 22416 || || || || |||||| Sbjct 28897710 ATCCAGAAGGAGTCCACC 28897727 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || || || || || | || || || || | || ||||| || || | | Sbjct 28897757 GATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATTACCCTTGAGGTTGAGTCGTC 28897816 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 ||| || | ||| | | || || || || ||||||||||| || || || || || Sbjct 28897817 CGACACTATTGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCA 28897876 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || ||||| || ||||| || || ||| | |||||| ||||||| | | |||||||| Sbjct 28897877 GCAGCGTCTGATCTTTGCTGGTAAGCAGCTTGAGGATGGCCGCACCCTTGCGGATTACAA 28897936 Query 22398 CATTCAAAAAGAATCCAC 22415 ||| || || || ||||| Sbjct 28897937 CATCCAGAAGGAGTCCAC 28897954 >seq8 Length=30429317 Score = 122 bits (134), Expect = 7e-23 Identities = 150/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 22212 TGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGA 22271 |||| ||||||| || ||||| || || | || || || || | || || || || || Sbjct 9003596 TGTACAGATGCAGATCTTTGTGAAGACACTCACTGGCAAGACCATAACCCTAGAGGTTGA 9003537 Query 22272 AACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACC 22331 || | || || | ||| || |||| || ||||| |||||||||||||||||||| Sbjct 9003536 GTCCTCTGACACGATTGACAATGTCAAGGCCAAGATTCAGGACAAGGAGGGTATTCCACC 9003477 Query 22332 CGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGA 22391 || || || || || || ||||| ||||| || | ||||| |||||| || | || Sbjct 9003476 TGACCAGCAGCGCCTCATCTTTGCGGGCAAGCAACTTGAGGACGGGCGCACCCTCGCAGA 9003417 Query 22392 TTACAACATTCAAAAAGAATCCACC 22416 |||||||||||| ||||| |||||| Sbjct 9003416 TTACAACATTCAGAAAGAGTCCACC 9003392 Score = 118 bits (130), Expect = 9e-22 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || || || ||||| ||||| | || || || || || | | Sbjct 9003133 ATGCAAATCTTTGTCAAGACATTGACCGGCAAAACCATTACCCTGGAGGTTGAGTCGTCA 9003074 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | | ||| ||| ||||| ||||||||| | ||||| || ||||| Sbjct 9003073 GACACAATTGACAACGTAAAAGCAAAGATTCAGGACAAGGAGAGCATTCCCCCGGATCAG 9003014 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || ||||| ||||| ||| | |||||| ||||||| | | ||||||||| Sbjct 9003013 CAGCGCCTGATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCTTAGCAGATTACAAC 9002954 Query 22399 ATTCAAAAAGAATCCACC 22416 || || || || |||||| Sbjct 9002953 ATCCAGAAGGAGTCCACC 9002936 Score = 109 bits (120), Expect = 5e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 22204 TATACATTTGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTT 22263 |||||||| | ||||||| || ||||| || ||| | || || || || | || ||| Sbjct 25234626 TATACATTCTTGCAGATGCAGATCTTTGTGAAGACTCTCACTGGCAAGACCATAACCCTT 25234685 Query 22264 GAAGTGGAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGT 22323 || || || || | |||||| | ||| || | || || || || ||||||||||| Sbjct 25234686 GAGGTTGAGTCCTCAGATACCATTGACAATGTAAAGGCCAAGATCCAGGACAAGGAGGGA 25234745 Query 22324 ATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACC 22383 || ||||| || || || ||||| || || || ||||| ||| | || ||| ||||| Sbjct 25234746 ATCCCACCGGACCAGCAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAAGATGGGCGCACG 25234805 Query 22384 GTCTCCGATTACAACATTCAAAAAGAATCCACC 22416 | | || |||||||| || || ||||||||| Sbjct 25234806 CTTGCTGACTACAACATCCAGAAGGAATCCACC 25234838 Score = 109 bits (120), Expect = 5e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || ||| | || || || || | ||||| || || || | | || Sbjct 25235325 ATGCAGATCTTCGTCAAGACTCTCACTGGCAAGACCATTACTCTGGAGGTTGAGAGCTCC 25235384 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| || | || || || || |||||||| |||||||| || || || Sbjct 25235385 GATACCATCGACAATGTGAAGGCTAAGATCCAGGACAAGGAAGGTATTCCCCCAGACCAG 25235444 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || |||||||| ||| | || ||| ||| ||| || |||| |||||| Sbjct 25235445 CAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGCCGTACCCTCGCCGACTACAAC 25235504 Query 22399 ATTCAAAAAGAATCCACC 22416 ||||| || || || ||| Sbjct 25235505 ATTCAGAAGGAGTCTACC 25235522 Score = 91.5 bits (100), Expect = 1e-13 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || || || || || || || |||| ||||| || || | | Sbjct 25234869 ATGCAAATCTTTGTCAAGACCTTGACTGGCAAGACTATCACCCTTGAGGTTGAGTCTTCT 25234928 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | ||| | | || ||| || || ||||||||||| ||||| || || || Sbjct 25234929 GATACTATTGACAACGTTAAGGCAAAGATCCAGGACAAGGAGGGGATTCCCCCGGACCAG 25234988 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || ||||| ||||| ||| | |||||| | || |||||| Sbjct 25234989 CAGCGTCTGATCTTTGCTGGCAAGCAGCTCGAGGATGGNNNNNNNNNNGCTGACTACAAC 25235048 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 || || || || |||||| | || | ||| |||| Sbjct 25235049 ATCCAGAAGGAGTCCACCCTTCACCTTGTTCTGCG 25235083 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| || || | ||||| || || | || ||||| || || | | Sbjct 9003361 ATGCAGATTTTTGTCAAGACCCTGACCGGAAAGACCATTACGCTTGAGGTCGAGTCTTCT 9003302 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | ||| || | || || ||||| ||||||||||| || || || || || Sbjct 9003301 GATACAATCGACAATGTGAAGGCGAAGATTCAGGACAAGGAGGGCATCCCCCCGGACCAG 9003242 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || |||||||| ||| | ||||| |||||| | | || ||||| Sbjct 9003241 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGACGCACCCTGGCTGACTACAAT 9003182 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 || || || || || ||| | || |||| Sbjct 9003181 ATCCAGAAGGAGTCTACCCTTCACCTAGT 9003153 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || ||| | || || || || | || || || || || | | | Sbjct 25235097 ATGCAGATTTTCGTCAAGACTCTCACTGGCAAGACAATTACCCTGGAGGTTGAGAGCTCA 25235156 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | | || || || || || |||||||| || || || || || Sbjct 25235157 GACACCATCGACAACGTGAAGGCGAAGATCCAGGATAAGGAGGGCATCCCCCCGGACCAG 25235216 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || || || || || ||| | |||||| ||||||| | |||| |||||| Sbjct 25235217 CAGAGACTCATCTTCGCTGGTAAGCAGCTGGAGGATGGCCGCACCCTTGCCGACTACAAC 25235276 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 ||||| || || || ||| |||| || || Sbjct 25235277 ATTCAGAAGGAGTCTACCCTACACTTGGT 25235305 >seq7 Length=32884216 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | ||||| || || | || || || || || || || Sbjct 29193470 ATGCAAATATTCGTGAAGACCCTCACCGGCAAGACCATTACCCTGGAGGTCGAGTCCTCC 29193529 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | || || || || ||||||||||| || ||||| || || Sbjct 29193530 GACACGATCGATAATGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCACCAGACCAG 29193589 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || ||||| || || ||| | |||||| ||||||| | | || |||||| Sbjct 29193590 CAGCGTCTCATCTTTGCTGGGAAGCAGCTCGAGGATGGCCGCACCCTTGCAGACTACAAC 29193649 Query 22399 ATTCAAAAAGAATCCACC 22416 || ||||| ||||||||| Sbjct 29193650 ATCCAAAAGGAATCCACC 29193667 Score = 95.1 bits (104), Expect = 1e-14 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||||| || || ||||| || | || || || || |||| | || || || || Sbjct 29193240 AGATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTTGAGTCCT 29193299 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 |||||| | ||| || | || || ||||| ||||||||||| || || || || | Sbjct 29193300 CCGATATGATTGACAATGTGAAGGCTAAGATTCAGGACAAGGAGGGCATCCCTCCGGACC 29193359 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | ||||| ||||| || || ||||| ||| | |||||| || || || | ||||| | Sbjct 29193360 AGCAACGCCTTATCTTCGCTGGCAAGCAGCTTGAGGATGGGCGTACTCTCGCGGATTATA 29193419 Query 22397 ACATTCAAAAAGAATCCACC 22416 |||| || || || |||||| Sbjct 29193420 ACATCCAGAAGGAGTCCACC 29193439 Score = 93.3 bits (102), Expect = 4e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || |||||||||||||||||||| || || || || || || || || ||||| Sbjct 29193827 AAGATCCAGGACAAGGAGGGTATTCCACCAGACCAGCAGCGCCTCATCTTCGCTGGCAAG 29193886 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||| | |||||| |||||| | | ||||||||||| || || || |||||| | || Sbjct 29193887 CAGCTTGAGGATGGTCGCACCCTTGCAGATTACAACATCCAGAAGGAGTCCACCCTGCAC 29193946 Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446 | || |||| | || |||||| Sbjct 29193947 CTTGTCCTGCGCCTTCGTGGAGGT 29193970 >seq11 Length=27185770 Score = 102 bits (112), Expect = 7e-17 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||||| || ||||| || || | ||||| || | |||| ||||| ||||| || Sbjct 4344823 AGATGCAGATCTTTGTGAAGACCCTGACCGGCAAGTCCATCACCCTTGAGGTGGAGTCCT 4344764 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 | || ||| | ||| | | || || || || ||||||||||| || || || || | Sbjct 4344763 CGGACACCATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGGATCCCTCCTGACC 4344704 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | || || || || || |||||||| ||| | ||||| |||||| | | || |||| Sbjct 4344703 AGCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGAAGGACGCACCCTTGCTGACTACA 4344644 Query 22397 ACATTCAAAAAGAATCCACCATACAT 22422 ||||||| || || |||||| | ||| Sbjct 4344643 ACATTCAGAAGGAGTCCACCCTCCAT 4344618 >seq1 Length=46529941 Score = 102 bits (112), Expect = 7e-17 Identities = 143/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| || || || || || | || || || ||| |||| || || ||||| || Sbjct 14154416 AAGATGCAGATCTTCGTGAAGACCCTGACGGGGAAGACGATCACGCTGGAGGTGGAGTCC 14154357 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || ||| | ||| | | || || || || ||||||||||| || || ||||| Sbjct 14154356 TCGGACACCATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGGATCCCGCCCGAC 14154297 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || || || || || |||||||| ||| | ||||| |||||| || |||| ||| Sbjct 14154296 CAGCAGCGGCTCATCTTCGCCGGCAAGCAGCTGGAGGACGGGCGCACCCTCGCCGACTAC 14154237 Query 22396 AACATTCAAAAAGAATCCACC 22416 ||||| || || || || ||| Sbjct 14154236 AACATCCAGAAGGAGTCGACC 14154216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419727938614780