Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26]
12 sequences; 372,860,283 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq9 143 5e-29
seq8 93.3 9e-14
seq6 93.3 9e-14
seq3 93.3 9e-14
seq2 93.3 9e-14
seq1 93.3 9e-14
seq12 91.5 3e-13
seq11 91.5 3e-13
seq5 91.5 3e-13
seq4 91.5 3e-13
>seq9
Length=31548187
Score = 143 bits (158), Expect = 5e-29
Identities = 551/853 (65%), Gaps = 22/853 (3%)
Strand=Plus/Minus
Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622
|||||||| || | |||||||| ||| ||||| |||||||| ||||||| ||||| | |
Sbjct 1132965 TCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCATCCAGTCGAACGGGTTGGCG 1132906
Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682
| |||||| ||| || || || | || | ||||| || || ||||| |
Sbjct 1132905 ACGTTGTACATCTTCTTGCACCCGAGCGCCATGAGCAGCCGGTCGGCGACGAACTCGATG 1132846
Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATA-CGACAAGGAATTGCCTCACAGAT 251741
||||| | ||| || || |||||| || | | |||| ||| || || ||||
Sbjct 1132845 TACTGGCTCATGAGCTCGCCGTTCATCCCGACGAGCGCGACGGGGAGC-GCGTCGCAGAC 1132787
Query 251742 GAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAG 251801
||| ||| | ||| || | || || || | || || ||| || ||| | ||
Sbjct 1132786 GAACTCCCTCTCGATGTCCACGGCGTCGGCGACGATCTCCTGGACGCGTGACTCGTCGAG 1132727
Query 251802 CTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTCGCG 251861
|||| || ||| ||||| | | || | ||| ||||||||||||||
Sbjct 1132726 CTTGCCGCGGAGGAGGTCGTAGAGGAGGCAGGCGAAGTCGCAGTGGAGACCCTCGTCGCG 1132667
Query 251862 ACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAGAA 251921
||||| ||||||||| | ||||| ||||| | || || ||| ||||||||||
Sbjct 1132666 GGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGTCCGCGCTTCTTGAGCCAGAA 1132607
Query 251922 GATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAAGGCG 251981
||| ||||| || || || ||||| | | |||||||| || | | || || |||||
Sbjct 1132606 GATGGCGCAGAATGAACCCGAGAAGAAGATCCCCTCGACGCAGGCGAAGGCGACGAGGCG 1132547
Query 251982 CTCAGCAAACGACTTGTCCTGCGACAA--GAACTTCTGTGCCCATGCTGCCTTCTTTCCA 252039
||| || || || | || || | | | | || ||||| | ||||| |
Sbjct 1132546 CTCGGCGAAGCGCTCG-CCGCCGTCGATCCATCGCATG-GCCCAGTCGGCCTTGCGGCGC 1132489
Query 252040 ACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGTCCTCGATG 252099
|| ||||||| || ||||| || ||||| || | |||| | ||||| ||||
Sbjct 1132488 ACGGCGGGGACGGTGTCGATGGCGCGGAAGAGGCGGTCCTTCTCGACGTCGTCGCGGATG 1132429
Query 252100 AGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAACATCTGGTAA 252159
|| || ||||| || |||||||||||||| |||||| ||| || |||||| |
Sbjct 1132428 TACGTCTCGAGCAGAAGCGAGTACATCTCCGAGTGGATGTTCTCGATGGCGATCTGGAAG 1132369
Query 252160 GCATAGAATAGACGCGCGGAAGGGTCGGTGACTT--CCGT-GGA---AAAGTTGTTTGCA 252213
| |||| || ||||| | |||| ||| | ||| ||| || || ||
Sbjct 1132368 CCGTAGA--AGGCGCGC----GCCTCGGCGACCTGCACGTCGGACATGAACCTGGAGGCG 1132315
Query 252214 ATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTGATGAAG 252273
| |||||| | ||| ||||| ||| | | || |||||| | || | | || ||||
Sbjct 1132314 AGGTTCTCGAGCACGATGCCGTCGGAGGCGGCGAAGAAGGCGAGCACGTGGGAGACGAAG 1132255
Query 252274 TGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCCTGATTCAGAGG--AA 252331
|| ||||| ||| ||| | || ||||| | ||| | ||||| |
Sbjct 1132254 TGGCGCTCGTCGGACGACAGCGCGGCATCCCAGTGGCGCGCGTC--GGCGGAGAGGTCCA 1132197
Query 252332 CTTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACATTGCGAACACATCAGGGT 252391
| || ||| |||||||||| | | ||||||||||||||| | | | | | ||||
Sbjct 1132196 CCTCCTCCGCCGTCCAGAACGACGCCACCGCCTTCTTGTAGAACTCCCAGATCTGCGGGT 1132137
Query 252392 ACTTGATTGGGAA 252404
|| |||| |||||
Sbjct 1132136 ACCTGATCGGGAA 1132124
Score = 120 bits (132), Expect = 6e-22
Identities = 253/375 (67%), Gaps = 2/375 (1%)
Strand=Plus/Plus
Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622
|||||||| || | |||||||| ||| ||||| |||||||| ||||||||||||| | |
Sbjct 8707331 TCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCATCCAGTCGAAGGGGTTGGCG 8707390
Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682
| |||||| ||| ||| || || | || || |||||| || || ||||| |
Sbjct 8707391 ACGTTGTACATCTTCTTGCAGCCGAGCGCCATGAGGAGGCGGTCGGCGACGAACTCGATG 8707450
Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCA-TACGACAAGGAATTGCCTCACAGAT 251741
||||| | ||| || || ||||||||| | | |||| || | || || ||||
Sbjct 8707451 TACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGCGCGAC-GGGGAGCGCGTCGCAGAC 8707509
Query 251742 GAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAG 251801
||| ||| | ||| || | || || || | || || | || | ||| ||
Sbjct 8707510 GAACTCCCTCTCGATGTCGACGGCGTCGGCGACGATCTCGCGGACGCGCGCCTCGTCGAG 8707569
Query 251802 CTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTCGCG 251861
|||| || ||| ||||| | | || | |||||| |||||||||||
Sbjct 8707570 CTTGCCGCGGAGGAGGTCGTAGAGGAGGCAGGCGAAGTCGCAGTGCAGGCCCTCGTCGCG 8707629
Query 251862 ACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAGAA 251921
||||| ||||||||| | ||||| ||||| | ||| || ||| ||||||||||
Sbjct 8707630 GGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGCCCCCGCTTCTTGAGCCAGAA 8707689
Query 251922 GATTGCGCAAAAGGA 251936
||| ||||| |||||
Sbjct 8707690 GATGGCGCAGAAGGA 8707704
>seq8
Length=30429317
Score = 93.3 bits (102), Expect = 9e-14
Identities = 60/66 (91%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||
Sbjct 15948693 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 15948752
Query 142563 CCCCAC 142568
||||||
Sbjct 15948753 CCCCAC 15948758
Score = 93.3 bits (102), Expect = 9e-14
Identities = 60/66 (91%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||
Sbjct 26435907 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 26435848
Query 142563 CCCCAC 142568
||||||
Sbjct 26435847 CCCCAC 26435842
Score = 93.3 bits (102), Expect = 9e-14
Identities = 60/66 (91%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||
Sbjct 26961291 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 26961232
Query 142563 CCCCAC 142568
||||||
Sbjct 26961231 CCCCAC 26961226
>seq6
Length=37594838
Score = 93.3 bits (102), Expect = 9e-14
Identities = 60/66 (91%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||
Sbjct 17867336 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 17867395
Query 142563 CCCCAC 142568
||||||
Sbjct 17867396 CCCCAC 17867401
>seq3
Length=27098305
Score = 93.3 bits (102), Expect = 9e-14
Identities = 60/66 (91%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||
Sbjct 26713535 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 26713594
Query 142563 CCCCAC 142568
||||||
Sbjct 26713595 CCCCAC 26713600
>seq2
Length=22967634
Score = 93.3 bits (102), Expect = 9e-14
Identities = 60/66 (91%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||
Sbjct 15882975 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 15882916
Query 142563 CCCCAC 142568
||||||
Sbjct 15882915 CCCCAC 15882910
Score = 93.3 bits (102), Expect = 9e-14
Identities = 60/66 (91%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||
Sbjct 20691138 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 20691079
Query 142563 CCCCAC 142568
||||||
Sbjct 20691078 CCCCAC 20691073
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| |||||||||||||||||||| || ||||||| || ||||| |||||||||||
Sbjct 20691306 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTTGTGGGTTCGAG 20691247
Query 142563 CCCCAC 142568
||||||
Sbjct 20691246 CCCCAC 20691241
>seq1
Length=46529941
Score = 93.3 bits (102), Expect = 9e-14
Identities = 60/66 (91%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||
Sbjct 32858829 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 32858888
Query 142563 CCCCAC 142568
||||||
Sbjct 32858889 CCCCAC 32858894
Score = 93.3 bits (102), Expect = 9e-14
Identities = 60/66 (91%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||
Sbjct 33805917 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 33805976
Query 142563 CCCCAC 142568
||||||
Sbjct 33805977 CCCCAC 33805982
Score = 93.3 bits (102), Expect = 9e-14
Identities = 60/66 (91%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||
Sbjct 38764372 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 38764431
Query 142563 CCCCAC 142568
||||||
Sbjct 38764432 CCCCAC 38764437
Score = 91.5 bits (100), Expect = 3e-13
Identities = 61/68 (90%), Gaps = 0/68 (0%)
Strand=Plus/Plus
Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560
|| ||||| |||||||||||||||||||| || ||||||| || |||||||||||||||
Sbjct 46465201 ATTGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 46465260
Query 142561 AGCCCCAC 142568
||||||||
Sbjct 46465261 AGCCCCAC 46465268
>seq12
Length=23490084
Score = 91.5 bits (100), Expect = 3e-13
Identities = 59/65 (91%), Gaps = 0/65 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||||
Sbjct 10846343 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 10846284
Query 142564 CCCAC 142568
|||||
Sbjct 10846283 CCCAC 10846279
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||||
Sbjct 12849666 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 12849725
Query 142564 CCCACA 142569
||| ||
Sbjct 12849726 CCCCCA 12849731
>seq11
Length=27185770
Score = 91.5 bits (100), Expect = 3e-13
Identities = 59/65 (91%), Gaps = 0/65 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||||
Sbjct 17767209 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 17767268
Query 142564 CCCAC 142568
|||||
Sbjct 17767269 CCCAC 17767273
Score = 91.5 bits (100), Expect = 3e-13
Identities = 59/65 (91%), Gaps = 0/65 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||||
Sbjct 17778036 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 17778095
Query 142564 CCCAC 142568
|||||
Sbjct 17778096 CCCAC 17778100
Score = 91.5 bits (100), Expect = 3e-13
Identities = 59/65 (91%), Gaps = 0/65 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||||
Sbjct 18037340 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 18037399
Query 142564 CCCAC 142568
|||||
Sbjct 18037400 CCCAC 18037404
>seq5
Length=38039368
Score = 91.5 bits (100), Expect = 3e-13
Identities = 107/145 (74%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 218657 AGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACCATCACGGTGAGCAGA 218716
|||| || |||||||| ||||||||||| ||| |||| ||||| || ||||||||||
Sbjct 30091989 AGGTGGCACAGTTTTCCGGTTATGTATCAGAACACTCTGCGTACCACCATGGTGAGCAGA 30091930
Query 218717 GTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTGGGCAGTAACAACATGAACT 218776
|| | || | ||| || ||||| || || | ||| ||||| || ||||| |||
Sbjct 30091929 GTTTAGCTAGTACTATTACTGGAATGGCTCAAGATTTTGTTGGCAGCAATAACATAAACC 30091870
Query 218777 TGCTGCTCCCCAACGGTCAGTTTGG 218801
| ||| ||||| ||||| |||||
Sbjct 30091869 TCTTGCAGCCCAATGGTCAATTTGG 30091845
>seq4
Length=26741765
Score = 91.5 bits (100), Expect = 3e-13
Identities = 59/65 (91%), Gaps = 0/65 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||||
Sbjct 23151348 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 23151289
Query 142564 CCCAC 142568
|||||
Sbjct 23151288 CCCAC 23151284
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||
Sbjct 22832400 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 22832459
Query 142563 CCCCAC 142568
|| |||
Sbjct 22832460 CCGCAC 22832465
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027836641970092
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