Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq8 104 2e-17 seq7 98.7 8e-16 seq9 95.1 1e-14 seq5 87.8 2e-12 >seq8 Length=30429317 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| || || |||||||| || | || || |||||| || || || ||| Sbjct 25234837 GTGGATTCCTTCTGGATGTTGTAGTCAGCAAGCGTGCGCCCATCTTCGAGCTGCTTGCCA 25234778 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| ||||||||||||| |||||||| || || || || ||||| ||||| ||| Sbjct 25234777 GCGAAGATGAGACGCTGCTGGTCCGGTGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTT 25234718 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||| || | ||| || || || | ||| | || ||||| || ||||| Sbjct 25234717 ACATTGTCAATGGTATCTGAGGACTCAACCTCAAGGGTTATGGTCTTGCCAGTGAGAGTC 25234658 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 25234657 TTCACAAAGATCTGCAT 25234641 Score = 102 bits (112), Expect = 7e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATC-GCTCATAGTACGAGAATCTTCAAGTTGTTTACC 114244 || || || || || ||||||||||| ||| | || || ||| || || || || || Sbjct 9002937 GTGGACTCCTTCTGGATGTTGTAATCTGCT-AAGGTGCGGCCATCCTCGAGCTGCTTGCC 9002995 Query 114245 AGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTT 114304 ||| |||| || ||||| || ||||| ||||||| || ||||| ||||||| ||| Sbjct 9002996 AGCAAAGATCAGGCGCTGCTGATCCGGGGGAATGCTCTCCTTGTCCTGAATCTTTGCTTT 9003055 Query 114305 TAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGT 114364 || | |||| ||||| | || || || |||| ||| | ||||||||||||| || Sbjct 9003056 TACGTTGTCAATTGTGTCTGACGACTCAACCTCCAGGGTAATGGTTTTGCCGGTCAATGT 9003115 Query 114365 TTTTACAAAAATCTGCAT 114382 || ||||| || ||||| Sbjct 9003116 CTTGACAAAGATTTGCAT 9003133 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 114174 ACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCA 114233 || || |||| ||||| || || ||||||||||| ||| | || || ||| || Sbjct 25235305 ACCAAGTGTAGGGTAGACTCCTTCTGAATGTTGTAGTCGGCAAGGGTGCGGCCATCCTCC 25235246 Query 114234 AGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCA 114293 || || ||||||||| ||||||| | ||| |||||||| || ||||| || || || Sbjct 25235245 AGCTGCTTACCAGCGAAGATGAGTCTCTGCTGGTCCGGGGGGATGCCCTCCTTATCCTGG 25235186 Query 114294 ATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTG 114353 ||||| || | | || | |||||| | | || || |||| ||| | || ||| Sbjct 25235185 ATCTTCGCCTTCACGTTGTCGATGGTGTCTGAGCTCTCAACCTCCAGGGTAATTGTCTTG 25235126 Query 114354 CCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || ||||| || || ||||||||||| Sbjct 25235125 CCAGTGAGAGTCTTGACGAAAATCTGCAT 25235097 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| |||||||||||||| | || || || |||||||| || || Sbjct 9003393 GTGGACTCTTTCTGAATGTTGTAATCTGCGAGGGTGCGCCCGTCCTCAAGTTGCTTGCCC 9003452 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||| ||||| ||||| || ||||| || || ||||| |||||| || Sbjct 9003453 GCAAAGATGAGGCGCTGCTGGTCAGGTGGAATACCCTCCTTGTCCTGAATCTTGGCCTTG 9003512 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||||| | ||| || || || | ||| | || ||||| || || || Sbjct 9003513 ACATTGTCAATCGTGTCAGAGGACTCAACCTCTAGGGTTATGGTCTTGCCAGTGAGTGTC 9003572 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 9003573 TTCACAAAGATCTGCAT 9003589 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 ||||| || || ||||||||||| ||| | ||||| |||||| || || || || Sbjct 25235521 GTAGACTCCTTCTGAATGTTGTAGTCGGCGAGGGTACGGCCATCTTCCAGCTGCTTGCCG 25235462 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| || ||||| ||||| || ||||| ||||| ||||| ||||| || Sbjct 25235461 GCGAAGATCAGGCGCTGCTGGTCTGGGGGAATACCTTCCTTGTCCTGGATCTTAGCCTTC 25235402 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | ||| |||| | || || |||| || | || ||||| || ||||| Sbjct 25235401 ACATTGTCGATGGTATCGGAGCTCTCAACCTCCAGAGTAATGGTCTTGCCAGTGAGAGTC 25235342 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 25235341 TTGACGAAGATCTGCAT 25235325 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 ||||| || || || || ||||| || || || || || || || || || || Sbjct 9003165 GTAGACTCCTTCTGGATATTGTAGTCAGCCAGGGTGCGTCCGTCCTCGAGCTGCTTGCCG 9003224 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| ||||||| ||||| |||||||| || ||||| || ||||| |||||| || Sbjct 9003225 GCGAAGATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGAATCTTCGCCTTC 9003284 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | || || | || ||||| || | || | || || |||||||| || Sbjct 9003285 ACATTGTCGATTGTATCAGAAGACTCGACCTCAAGCGTAATGGTCTTTCCGGTCAGGGTC 9003344 Query 114366 TTTACAAAAATCTGCATGGCT 114386 || ||||||||||||||| || Sbjct 9003345 TTGACAAAAATCTGCATGCCT 9003365 >seq7 Length=32884216 Score = 98.7 bits (108), Expect = 8e-16 Identities = 162/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 |||||||| || || | || || | || | || ||||| ||||| |||||||| || Sbjct 29193699 ATACCGCCCCGGAGGCGCAGGACAAGGTGCAGGGTGGATTCCTTTTGGATGTTGTAGTCT 29193640 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || ||| || || || || ||||| ||||||||||||| ||||| || Sbjct 29193639 GCAAGGGTGCGGCCATCCTCGAGCTGCTTCCCAGCAAAGATGAGACGCTGCTGGTCTGGT 29193580 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || || || ||||| ||||| || | | || | ||||||| ||| ||| Sbjct 29193579 GGGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTATCGATCGTGTCGGAGGACTCG 29193520 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 114386 || |||| ||| | || |||||||| || || || || || || |||||| || Sbjct 29193519 ACCTCCAGGGTAATGGTCTTGCCGGTGAGGGTCTTCACGAATATTTGCATGCCT 29193466 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || ||||| ||||| | |||||| ||| ||||| || || ||| Sbjct 29193438 GTGGACTCCTTCTGGATGTTATAATCCGCGAGAGTACGCCCATCCTCAAGCTGCTTGCCA 29193379 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| || || || ||||||||||| ||||| || ||||| |||||| || Sbjct 29193378 GCGAAGATAAGGCGTTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGAATCTTAGCCTTC 29193319 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| | |||| ||| || || |||| ||| | || ||||| || || || Sbjct 29193318 ACATTGTCAATCATATCGGAGGACTCAACCTCCAAGGTGATGGTCTTGCCAGTGAGGGTC 29193259 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 29193258 TTAACGAATATCTGCAT 29193242 >seq9 Length=31548187 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || ||||||||||| | || || ||| ||||| || |||||| Sbjct 28897954 GTGGACTCCTTCTGGATGTTGTAATCCGCAAGGGTGCGGCCATCCTCAAGCTGCTTACCA 28897895 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| |||||||| |||||||| || ||||| || ||||| ||||| || Sbjct 28897894 GCAAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTC 28897835 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||||||| || || || || | ||| | || ||||| ||||| || Sbjct 28897834 ACGTTGTCAATAGTGTCGGACGACTCAACCTCAAGGGTAATGGTCTTGCCAGTCAGGGTC 28897775 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 28897774 TTCACGAAGATCTGCAT 28897758 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || ||||||||||| | || || ||| || ||||| || ||| Sbjct 28421684 GTGGACTCCTTCTGGATGTTGTAATCCGCGAGGGTGCGGCCATCCTCTAGTTGCTTGCCA 28421743 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||||||||| || ||||| || |||||||| || ||||| |||||| || Sbjct 28421744 GCAAAGATGAGACGTTGCTGGTCAGGTGGAATGCCCTCCTTGTCCTGAATCTTGGCCTTC 28421803 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| || || | ||| || || || | ||| | || ||||| || || || Sbjct 28421804 ACATTGTCAATTGTATCAGAGGACTCAACCTCGAGGGTGATGGTCTTGCCAGTGAGTGTC 28421863 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 28421864 TTCACAAAGATCTGCAT 28421880 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || |||||||||||||| || ||||| ||| || || || || || Sbjct 28421456 GTGGACTCCTTCTGAATGTTGTAATCAGCCAGTGTACGTCCATCCTCGAGCTGCTTGCCT 28421515 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||| ||||| |||||||| ||||| || || ||||| |||||| || Sbjct 28421516 GCAAAGATGAGGCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGAATCTTCGCCTTC 28421575 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||| | ||| ||||| || | || | || || || |||| || Sbjct 28421576 ACATTGTCGATCTTGTCCGAGGACTCGACCTCAAGAGTGATGGTCTTTCCTGTCAAGGTC 28421635 Query 114366 TTTACAAAAATCTGCATGGCT 114386 || ||||| ||||||||| || Sbjct 28421636 TTCACAAAGATCTGCATGCCT 28421656 Score = 86.0 bits (94), Expect = 5e-12 Identities = 96/126 (76%), Gaps = 2/126 (2%) Strand=Plus/Minus Query 114165 AGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATC-GCTCATAGTACG 114223 || |||| || ||||| | ||| || ||||| |||||||||||||| ||| || ||||| Sbjct 26865709 AGCCTCAGGACCAAATGGAGCGTTGACTCTTTCTGAATGTTGTAATCAGCTAAT-GTACG 26865651 Query 114224 AGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTC 114283 |||||| ||||| || || ||| | || || | || ||||| || ||||| || || Sbjct 26865650 TCCATCTTCCAGTTGCTTCCCTGCGAAAATCAGCCTTTGCTGGTCTGGGGGAATACCCTC 26865591 Query 114284 TTTGTC 114289 |||||| Sbjct 26865590 TTTGTC 26865585 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| || || || || ||| || || || || || Sbjct 28897726 GTGGACTCCTTCTGGATGTTGTAGTCAGCCAAGGTGCGGCCATCCTCCAGCTGCTTGCCG 28897667 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| ||||||||||||| |||||||| || || || || ||||| ||||| || Sbjct 28897666 GCGAAGATGAGACGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTGGCCTTC 28897607 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | ||||| | ||| ||||| || | || | || ||||||||||| || Sbjct 28897606 ACGTTGTCGATCGTGTCCGAGGACTCGACCTCAAGCGTGATGGTCTTGCCGGTCAGGGTC 28897547 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 28897546 TTGACGAAGATCTGCAT 28897530 >seq5 Length=38039368 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 114227 ATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTT 114286 ||| || || || || |||||| ||||||||||||| |||||||| || ||||| || || Sbjct 3286925 ATCCTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTT 3286984 Query 114287 GTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCAC 114346 || ||||| || | | || | |||||| | ||| || || || | ||| | Sbjct 3286985 ATCTTGGATCTTAGCCTTGACATTATCGATGGTGTCAGAGGACTCCACCTCGAGGGTGAT 3287044 Query 114347 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||||||||| || || ||||| |||||||| Sbjct 3287045 AGTCTTGCCGGTCAATGTCTTCACAAAGATCTGCAT 3287080 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420134338555344