Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq8 109 4e-19 seq1 87.8 1e-12 seq9 84.2 2e-11 seq12 82.4 6e-11 seq6 82.4 6e-11 >seq8 Length=30429317 Score = 109 bits (120), Expect = 4e-19 Identities = 163/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| ||||||| ||||| || ||||| ||| ||| |||||||||||||||||||| Sbjct 9003363 CCTCCCCTCAGCCTAAGCACAAGGTGAAGGGTGGACTCTTTCTGAATGTTGTAATCTGCG 9003422 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | ||| |||| || | ||||||||| ||||| || ||||||||||| || || Sbjct 9003423 AGGGTGCGCCCGTCCTCAAGTTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTCAGGTGGA 9003482 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTT---AATGGAACTCACACTATCAGTAGATTCG 34077 | | ||| |||||| ||| || ||| | || | || | |||| || || Sbjct 9003483 ATACCCTCCTTGTCCTGAATCTTGGCCTTGACATTGTCAATC---GTGTCAGAGGACTCA 9003539 Query 34078 CATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || | ||||| || || || || ||||| ||||||||||| ||||| Sbjct 9003540 ACCTCTAGGGTTATGGTCTTGCCAGTGAGTGTCTTCACAAAGATCTGCAT 9003589 Score = 105 bits (116), Expect = 5e-18 Identities = 157/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || |||||||| || | ||| ||||||||| |||||||||||||| || || Sbjct 9002916 AGACGGAGCACCAGGTGCAAGGTGGACTCCTTCTGGATGTTGTAATCTGCTAAGGTGCGG 9002975 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 | || || | |||||||| ||||| |||||||||||||||||| || | |||||| Sbjct 9002976 CCATCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGATCCGGGGGAATGCTCTCC 9003035 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGCATTCGACCGT 34088 |||||| | | | ||||||| | || | | || | || || || | || Sbjct 9003036 TTGTCC-TGAATCTTTGCTTTTACGTTGTCAATTGTGTCTGACGACTCAACCTCCAGGGT 9003094 Query 34089 TATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128 || ||||| ||||| | ||| || ||||||||||||||| Sbjct 9003095 AATGGTTTTGCCGGTCAATGTCTTGACAAAGATTTGCATT 9003134 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || || |||| ||||| || ||||| || ||||||||| || ||||| || ||| Sbjct 9003135 CCACCCCTGAGCCTGAGCACTAGGTGAAGGGTAGACTCCTTCTGGATATTGTAGTCAGCC 9003194 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || |||| || | ||||||||||| || || ||||||||||| ||| || Sbjct 9003195 AGGGTGCGTCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGGGGG 9003254 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTT--AATGGAACTC-ACACTATCAGTAGATTCG 34077 | || ||| |||||| ||| || ||| || | || | |||||| ||| ||| Sbjct 9003255 ATGCCCTCCTTGTCCTGAATCTTCGCCTTCACATTG---TCGATTGTATCAGAAGACTCG 9003311 Query 34078 CATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || | ||| || || |||||||| || || || ||||| || ||||| Sbjct 9003312 ACCTCAAGCGTAATGGTCTTTCCGGTCAGGGTCTTGACAAAAATCTGCAT 9003361 >seq1 Length=46529941 Score = 87.8 bits (96), Expect = 1e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || |||||||| || ||||| ||||||||| |||||||| || |||| ||| Sbjct 27877955 AGGCGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGC 27877896 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| |||| ||||||||||| || || || |||||||| ||| ||| | | ||| Sbjct 27877895 CCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCCGGCGGGATCCCCTCC 27877836 Query 34030 TTGTCC 34035 |||||| Sbjct 27877835 TTGTCC 27877830 >seq9 Length=31548187 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || |||||||| || | ||| ||||||||||||||||||||| |||| | || Sbjct 28421435 AGGCGGAGCACCAGGTGCAAGGTGGACTCCTTCTGAATGTTGTAATCAGCCAGTGTACGT 28421494 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 | || || | |||||||| ||||| || ||||||||||| ||| || | | ||| Sbjct 28421495 CCATCCTCGAGCTGCTTGCCTGCAAAGATGAGGCGCTGCTGGTCCGGGGGAATTCCCTCC 28421554 Query 34030 TTGTCCATAATTTT 34043 |||||| ||| || Sbjct 28421555 TTGTCCTGAATCTT 28421568 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || || |||| || ||||| ||||| ||| ||||||||| |||||||| || ||| Sbjct 28897756 CCACCCCTGAGCCTGAGAACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCC 28897697 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 || || | || |||| ||||||||||| || || || |||||||| ||| || Sbjct 28897696 AAGGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGG 28897637 Query 34021 ACGCTCTCTTTGTCC 34035 | | ||| |||||| Sbjct 28897636 ATACCCTCCTTGTCC 28897622 >seq12 Length=23490084 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || || |||| || |||| ||||| || |||||||||||||||||| || ||| Sbjct 15024003 CCACCCCTGAGCCTGAGGACCAAGTGAAGAGTTGACTCCTTCTGAATGTTGTAGTCGGCC 15023944 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | | ||| | || |||| ||||||||||| ||||||| ||||| ||||| Sbjct 15023943 AGTGTGCGCCCATCTTCCAGCTGCTTGCCGGCGAATATCAAACGCTGTTGATC 15023891 >seq6 Length=37594838 Score = 82.4 bits (90), Expect = 6e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || |||||||| ||||||||| ||||||||| |||||||| || |||| || Sbjct 8552855 AGGCGAAGCACCAGGTGAAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGG 8552796 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014 | || |||| ||||| ||||| || || ||||||||||| ||| Sbjct 8552795 CCATCCTCCAGCTGCTTCCCGGCGAAGATGAGGCGCTGCTGGTCC 8552751 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397062341929624