Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq9 145 8e-30 seq8 102 8e-17 seq1 98.7 1e-15 seq11 91.5 1e-13 >seq9 Length=31548187 Score = 145 bits (160), Expect = 8e-30 Identities = 350/515 (68%), Gaps = 20/515 (4%) Strand=Plus/Plus Query 52328 GCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGAC-ACCGCCA 52386 |||||||| ||||| ||| | ||||| ||| |||||||| ||| | | ||| Sbjct 1132484 GCCGTGCGC-CGCAA---GGCCGACTGGGCCATGCGATGGATCGACGGCGGCGAGCGCTT 1132539 Query 52387 CGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCT 52446 ||| ||||||| | || ||||||||| |||||||| | || || || || | Sbjct 1132540 CGC----CGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGGATCTTCTTCTCGGGTTCAT 1132595 Query 52447 TTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACG 52506 | ||||||||| | | || | | || | ||||| ||||| || ||| ||||| Sbjct 1132596 TCTGCGCCATCTTCTGGCTCAAGAAGCGCGGACTCATGCCGGGCCTCACCTTCTCCAACG 1132655 Query 52507 AGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAGACGC 52566 || | || || |||||||| || || ||| ||||| || |||||| |||| ||| | Sbjct 1132656 AGCTCATCTCCCGCGACGAGGGTCTCCACTGCGACTTCGCCTGCCTCCTCTAC--GAC-C 1132712 Query 52567 GCGTGACCGAAAAATTGGATTCG-GACACGA-TCCTGAGCATGTTCAAGGAGGCGGTGGC 52624 | | || || | || || | |||| ||| | || || || || |||| Sbjct 1132713 TCCTCCGCGGCAAGCTCGA--CGAGTCACGCGTCCAGGAGATCGTCGCCGACGCCGTGGA 1132770 Query 52625 TATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCA 52684 ||||| | |||||| | | |||||| || |||| ||| | || ||||||| | Sbjct 1132771 CATCGAGAGGGAGTTCGTCTGCGACGCGCTCCCCGTCGCGCTCGTCGGGATGAACGGCGA 1132830 Query 52685 GTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCC 52744 | |||| || ||||||||||||| || || || || ||| | || ||||||| || Sbjct 1132831 GCTCATGAGCCAGTACATCGAGTTCGTCGCCGACCGGCTGCTCATGGCGCTCGGGT-GCA 1132889 Query 52745 A-AAGTACTTCAACGCTCGC-AATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGC 52802 | ||| | ||||| |||| || ||||| || | ||| | ||| || || ||||| Sbjct 1132890 AGAAGATGTACAACG-TCGCCAACCCGTTCGACTGGATGGAGCTCATCTCCCTGCAGGGC 1132948 Query 52803 AAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 ||||||||||| ||||||||||| |||||||| || Sbjct 1132949 AAGACCAACTTCTTCGAGAAGCGCGTCGGCGACTA 1132983 Score = 111 bits (122), Expect = 2e-19 Identities = 246/359 (69%), Gaps = 9/359 (3%) Strand=Plus/Minus Query 52482 ATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGAC 52541 ||||| ||||| || ||| ||||||| | || || |||||||| || |||||| ||| Sbjct 8707665 ATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGCCTGCACTGCGAC 8707606 Query 52542 TTTGCGTGCCTCTACTACAAGACGCGCGTGACCGAAAAATTGGATTCGGA-CACGATCCT 52600 || || |||||| |||| ||| | | | || || | || || | || | Sbjct 8707605 TTCGCCTGCCTCCTCTAC--GAC-CTCCTCCGCGGCAAGCTCGACGAGGCGCGCGTCCGC 8707549 Query 52601 GAGCATGTTCAAGGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGT 52660 ||| || || || || || | ||||| | |||||| | | |||||| || || Sbjct 8707548 GAG-ATCGTCGCCGACGCCGTCGACATCGAGAGGGAGTTCGTCTGCGACGCGCTCCCCGT 8707490 Query 52661 CGAGCTGCTGGGCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCG 52720 || ||| | |||||||||| | |||| || ||||||||||||| || || || || Sbjct 8707489 CGCGCTCGTCGGCATGAACGGCGACCTCATGAGCCAGTACATCGAGTTCGTCGCCGACCG 8707430 Query 52721 TCTGTTGGTGCAGCTCGGGCAGCCA-AAGTACTTCAACGCTCGC-AATCCGTTTGAGTTT 52778 || | || |||||| | || | ||| | ||||| |||| || || || || | Sbjct 8707429 CCTCCTCATGGCGCTCGG-CTGCAAGAAGATGTACAACG-TCGCCAACCCCTTCGACTGG 8707372 Query 52779 ATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 ||| | ||| || || |||||||||||||||| ||||||||||| |||||||| || Sbjct 8707371 ATGGAGCTCATCTCCCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGACTA 8707313 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| || || || ||||| || || || |||| Sbjct 28897723 GACTCCTTCTGGATGTTGTAGTCAGCCAAGGTGCGGCCATCCTCCAGCTGCTTGCCGGCG 28897664 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| |||||||| || ||||| || ||||| ||| || || | Sbjct 28897663 AAGATGAGACGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTGGCCTTCACG 28897604 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||||| | ||||| ||||| | ||| | || || || ||||| || || Sbjct 28897603 TTGTCGATCGTGTCCGAGGACTCGACCTCAAGCGTGATGGTCTTGCCGGTCAGGGTCTTG 28897544 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 28897543 ACGAAGATCTGCAT 28897530 Score = 86.0 bits (94), Expect = 6e-12 Identities = 141/200 (71%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| ||||||||||| || || ||||| |||||||| || || || | | Sbjct 28421459 GACTCCTTCTGAATGTTGTAATCAGCCAGTGTACGTCCATCCTCGAGCTGCTTGCCTGCA 28421518 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG--TTTTA 138538 |||| || ||||| |||||||| || || || || ||||| ||| | || | || Sbjct 28421519 AAGATGAGGCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTC-CTGAATCTTCGCCTTCAC 28421577 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 |||| || | |||| | ||||| ||||| | || | || || || |||| || | Sbjct 28421578 ATTG-TCGATCTTGTCCGAGGACTCGACCTCAAGAGTGATGGTCTTTCCTGTCAAGGTCT 28421636 Query 138599 TTACAAAAATCTGCATGGCT 138618 | ||||| ||||||||| || Sbjct 28421637 TCACAAAGATCTGCATGCCT 28421656 >seq8 Length=30429317 Score = 102 bits (112), Expect = 8e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | || || ||||||||| || || |||| Sbjct 3435890 GACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCG 3435831 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || ||||| |||||||| || || ||||| ||||| ||| || || | Sbjct 3435830 AAGATGAGGCGCTGCTGGTCCGGGGGGATCCCTTCCTTGTCCTGGATCTTGGCCTTCACG 3435771 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | ||||||||||| | ||| | || || || ||||| || || Sbjct 3435770 TTGTCGATGGTGTCCGAGGACTCCACCTCCAGCGTGATGGTCTTCCCCGTCAGGGTCTTC 3435711 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 3435710 ACGAAGATCTGCAT 3435697 Score = 95.1 bits (104), Expect = 1e-14 Identities = 143/200 (72%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || || |||||||| || || || ||||||||| || || |||| Sbjct 9003168 GACTCCTTCTGGATATTGTAGTCAGCCAGGGTGCGTCCGTCCTCGAGCTGCTTGCCGGCG 9003227 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 |||| || ||||| |||||||| || || || || ||||| ||| | || | || | Sbjct 9003228 AAGATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCC-TGAATCTTCGCCTTCAC 9003286 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 |||| | | || || | ||||| ||||| | ||| | || || || ||||| || | Sbjct 9003287 ATTGT-CGATTGTATCAGAAGACTCGACCTCAAGCGTAATGGTCTTTCCGGTCAGGGTCT 9003345 Query 138599 TTACAAAAATCTGCATGGCT 138618 | ||||||||||||||| || Sbjct 9003346 TGACAAAAATCTGCATGCCT 9003365 Score = 87.8 bits (96), Expect = 2e-12 Identities = 139/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||| || ||||||||||| || | || ||| |||||| ||||| || || | | Sbjct 9003396 GACTCTTTCTGAATGTTGTAATCTGCGAGGGTGCGCCCGTCCTCAAGTTGCTTGCCCGCA 9003455 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG--TTTTA 138538 |||| || ||||| ||||| || || ||||| || ||||| ||| | || | || Sbjct 9003456 AAGATGAGGCGCTGCTGGTCAGGTGGAATACCCTCCTTGTC-CTGAATCTTGGCCTTGAC 9003514 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 |||| || | ||||| | ||||| ||||| | || | || || ||||| || || | Sbjct 9003515 ATTG-TCAATCGTGTCAGAGGACTCAACCTCTAGGGTTATGGTCTTGCCAGTGAGTGTCT 9003573 Query 138599 TTACAAAAATCTGCAT 138614 | ||||| |||||||| Sbjct 9003574 TCACAAAGATCTGCAT 9003589 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || ||||| || ||||||||||| | || ||| || ||||| || || || | Sbjct 25234834 GATTCCTTCTGGATGTTGTAGTCAGCAAGCGTGCGCCCATCTTCGAGCTGCTTGCCAGCG 25234775 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| |||||||| |||||||| || || || || ||||| ||| || |||| | Sbjct 25234774 AAGATGAGACGCTGCTGGTCCGGTGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTTACA 25234715 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | ||| || | ||||| ||||| | || | || || ||||| ||||| || Sbjct 25234714 TTG-TCAATGGTATCTGAGGACTCAACCTCAAGGGTTATGGTCTTGCCAGTGAGAGTCTT 25234656 Query 138600 TACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 25234655 CACAAAGATCTGCAT 25234641 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| ||||||||||||||| | ||||| || || || || || |||| Sbjct 25235518 GACTCCTTCTGAATGTTGTAGTCGGCGAGGGTACGGCCATCTTCCAGCTGCTTGCCGGCG 25235459 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| || ||||| ||||| || || |||||||| ||||| ||| || || | | Sbjct 25235458 AAGATCAGGCGCTGCTGGTCTGGGGGAATACCTTCCTTGTCCTGGATCTTAGCCTTCACA 25235399 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | ||| |||| ||| ||||| | || | || || ||||| ||||| || Sbjct 25235398 TTG-TCGATGGTATCGGAGCTCTCAACCTCCAGAGTAATGGTCTTGCCAGTGAGAGTCTT 25235340 Query 138600 TACAAAAATCTGCAT 138614 || || |||||||| Sbjct 25235339 GACGAAGATCTGCAT 25235325 >seq1 Length=46529941 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | || ||| |||||| || || || |||| Sbjct 14154220 GACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGCCCGTCCTCCAGCTGCTTGCCGGCG 14154279 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || ||||| ||||| || || || || || ||||| ||| || || | Sbjct 14154280 AAGATGAGCCGCTGCTGGTCGGGCGGGATCCCCTCCTTGTCCTGGATCTTCGCCTTCACG 14154339 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | ||||||||||| | ||| | ||| || || ||||| || || Sbjct 14154340 TTGTCGATGGTGTCCGAGGACTCCACCTCCAGCGTGATCGTCTTCCCCGTCAGGGTCTTC 14154399 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 14154400 ACGAAGATCTGCAT 14154413 Score = 87.8 bits (96), Expect = 2e-12 Identities = 139/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| || || ||| |||||| || || || |||| Sbjct 27877931 GACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGCCCGTCCTCCAGCTGCTTGCCGGCG 27877872 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || ||||| |||||||| || || || || ||||| || || | || | Sbjct 27877871 AAGATGAGCCGCTGCTGGTCCGGCGGGATCCCCTCCTTGTC-CTGCACCTTCGCCTTGA- 27877814 Query 138541 TGTTC--CACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 ||||| | |||||| | ||||||||| | ||| | || || || ||||| || | Sbjct 27877813 TGTTCTGGATCGTGTCGCTGCTCTCCACCTCCAGCGTGATGGTCTTCCCCGTCAGGGTCT 27877754 Query 138599 TTACAAAAATCTGCAT 138614 | || || |||||||| Sbjct 27877753 TCACGAAGATCTGCAT 27877738 >seq11 Length=27185770 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || || | ||| | || | ||| | | | |||||||| |||||||||||||| Sbjct 4344594 GCCACCACGGAGACGGAGCACAAGATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCAGC 4344653 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || || |||||||| || || |||| |||| || ||||| ||||| ||||| Sbjct 4344654 AAGGGTGCGTCCTTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCAGGAGG 4344713 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| || || | | || | |||||| | |||||||| Sbjct 4344714 GATCCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCAC 4344773 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | | || || ||||| || || ||||| |||||||| Sbjct 4344774 CTCAAGGGTGATGGACTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 4344821 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496262325560640