Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq8 87.8 1e-12 >seq8 Length=30429317 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 |||||||| || ||||| || ||||||||||| ||| | | | |||| || | ||| Sbjct 9003387 TGAAGGGTGGACTCTTTCTGAATGTTGTAATCTGCGAGGGTGCGCCCGTCCTCAAGTTGC 9003446 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 ||||| || | || | ||||| ||||| |||||| || |||||||| ||| ||| Sbjct 9003447 TTGCCCGCAAAGATGAGGCGCTGCTGGTCAGGTGGAATACCCTCCTTGTCCTGAATCTTG 9003506 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 || ||| | || || || || || || |||| ||| ||||| || || || Sbjct 9003507 GCCTTGACATTGTCAATCGTGTCAGAGGACTCAACCTCTAGGGTTATGGTCTTGCCAGTG 9003566 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 || || || ||||| || ||||| Sbjct 9003567 AGTGTCTTCACAAAGATCTGCAT 9003589 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 || |||||||| || || || |||||||| ||| ||| | | | ||||| | || Sbjct 25235527 TGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGCGAGGGTACGGCCATCTTCCAGCTGC 25235468 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 ||||| ||| | |||| ||||| ||||| ||||| ||||||||||| || || Sbjct 25235467 TTGCCGGCGAAGATCAGGCGCTGCTGGTCTGGGGGAATACCTTCCTTGTCCTGGATCTTA 25235408 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 || ||| | || || |||||| | || || || | |||||||| || || || Sbjct 25235407 GCCTTCACATTGTCGATGGTATCGGAGCTCTCAACCTCCAGAGTAATGGTCTTGCCAGTG 25235348 Query 15154 AGAGTTTTTACAAAAATTTGCATA 15177 ||||| || || || || |||||| Sbjct 25235347 AGAGTCTTGACGAAGATCTGCATA 25235324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357391947731420