Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26]
12 sequences; 372,860,283 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq8 96.9 3e-15
seq5 82.4 7e-11
>seq8
Length=30429317
Score = 96.9 bits (106), Expect = 3e-15
Identities = 162/229 (71%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATC-GCT 45172
|| |||||||| | | ||| || |||| || || ||||| ||||| || ||||| |||
Sbjct 9002907 CCACCGCGGAGACGGAGCACCAGGTGCAAGGTGGACTCCTTCTGGATGTTGTAATCTGCT 9002966
Query 45173 GACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGG 45232
| ||| ||| || | || || || || | |||| || ||||| ||||| ||
Sbjct 9002967 AA-GGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGATCCGGGGG 9003025
Query 45233 AATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGA 45291
||||| || || || ||||| ||| ||| | || | || | ||||| || ||||| |
Sbjct 9003026 AATGCTCTCCTTGTCCTGAATCTTTGCTTTTA-CGTTGTCAATTGTGTCTGACGACTCAA 9003084
Query 45292 CTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
| || || |||| ||||||||||| | || || ||||| ||||||||
Sbjct 9003085 CCTCCAGGGTAATGGTTTTGCCGGTCAATGTCTTGACAAAGATTTGCAT 9003133
Score = 91.5 bits (100), Expect = 1e-13
Identities = 158/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
||||| || | |||||| | |||||| || || || || ||||| |||||||| || ||
Sbjct 9003132 ATTCCACCCCTGAGCCTGAGCACTAGGTGAAGGGTAGACTCCTTCTGGATATTGTAGTCA 9003191
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
| ||| || || | || || || ||| | || | || |||||||||||
Sbjct 9003192 GCCAGGGTGCGTCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGG 9003251
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290
|| ||||| || || || ||||| || || | || | || || |||||||||
Sbjct 9003252 GGGATGCCCTCCTTGTCCTGAATCTTCGCCTTCACATTGTCGATTGTATCAGAAGACTCG 9003311
Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| || || |||| || || ||||| || || || |||||||| |||||
Sbjct 9003312 ACCTCAAGCGTAATGGTCTTTCCGGTCAGGGTCTTGACAAAAATCTGCAT 9003361
>seq5
Length=38039368
Score = 82.4 bits (90), Expect = 7e-11
Identities = 135/195 (69%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 45147 GATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCG 45206
|| ||||| ||||| || || || | ||| | ||| |||| || || || |||
Sbjct 3286887 GACTCCTTCTGGATGTTGTAGTCAGCAAGGGTCCTGCCATCCTCCAGCTGCTTGCCAGCG 3286946
Query 45207 TATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATC 45266
| || | || ||||||||||| || ||||| || |||||||| || || ||||
Sbjct 3286947 AAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTATCTTGGATCTTAGCCTTGACA 3287006
Query 45267 GCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTT 45326
|| | |||||| || ||||| || ||||| || | || |||||||| | || ||
Sbjct 3287007 TTATCGATGGTGTCAGAGGACTCCACCTCGAGGGTGATAGTCTTGCCGGTCAATGTCTTC 3287066
Query 45327 ACAAAAATTTGCATC 45341
||||| || ||||||
Sbjct 3287067 ACAAAGATCTGCATC 3287081
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 452003132199520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |