Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq4 275 8e-69 seq5 127 3e-24 seq11 102 1e-16 >seq4 Length=26741765 Score = 275 bits (304), Expect = 8e-69 Identities = 277/360 (77%), Gaps = 0/360 (0%) Strand=Plus/Minus Query 7534 AGCAGCAAGGTCAAGAGGGAAGTTGTGAGCATTACGCTCGTGCATGACTTCCATGCCAAG 7593 |||||| ||||| ||||||||||||||||||||||| |||||||| |||||||| ||||| Sbjct 12116578 AGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAG 12116519 Query 7594 ACCAGCACGGTTGAGCACGTCTGCCCAGGTGTTCAGGACACGACCTTGACCATCAATGAT 7653 | ||||||||||| | || ||||| || || | || |||||||| | ||||| | Sbjct 12116518 ATTAGCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAACTAC 12116459 Query 7654 GGACTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATGGTGCTAACACCAAGAGCAGT 7713 || |||||||| ||||| ||||| || ||||| ||||| || |||| ||| | |||||| Sbjct 12116458 AGATTGGTTGAAATTGAATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGCAGT 12116399 Query 7714 GAACCAGATGCCAACAACTGGCCATGCTGCGAGGAAGAAGTGCAGCGAACGGGAGTTGTT 7773 |||||| || || || || ||||| || || | ||||||||| | ||||| |||||||| Sbjct 12116398 GAACCAAATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTT 12116339 Query 7774 GAACGAAGCGTATTGGAAGATCAGACGACCAAAGTATCCGTGAGCAGCAACGATGTTGTA 7833 || ||| ||||||||||| | || ||||| || || ||||| || || || || || Sbjct 12116338 AAAACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATTATA 12116279 Query 7834 GGTCTCTTCTTCTTGACCGAACTTATAACCATAGTTCTGGGACTCAGACTCAGTGGTTTC 7893 |||||||| |||||||| || | ||||| | || || || ||||||||||| Sbjct 12116278 AGTCTCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGTTTC 12116219 Score = 262 bits (290), Expect = 5e-65 Identities = 302/404 (75%), Gaps = 2/404 (0%) Strand=Plus/Plus Query 7780 AGCGTATTGGAAGATCAGACGACCAAAGTATCCGTGAGCAGCAACGATGTTGTAGGTCTC 7839 ||| ||||||||||| | || ||||| || || ||||| || || || || || ||||| Sbjct 188484 AGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATTATAAGTCTC 188543 Query 7840 TTCTTCTTGACCGAACTTATAACCATAGTTCTGGGACTCAGACTCAGTGGTTTCACGAAC 7899 ||| |||||||| || | ||||| | || || || ||||||||||| | | Sbjct 188544 TTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGTTTCCCTGAA 188603 Query 7900 CAGAGAAGAGGTTACAAGCGAACCATGCATCGCAC-TGAACAGAGAACCACCAAAGACAC 7958 || | ||||||||| | ||||||||||| |||| |||| || ||||| | || |||| Sbjct 188604 CAAACTAGAGGTTACCAAAGAACCATGCATAGCACTTGAATAGGGAACCGCATAATACAC 188663 Query 7959 CAGCGACGCCCAGCATGTGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAAGACAA 8018 |||| || || | |||||| || || ||||| |||||||| |||||||| ||||| |||| Sbjct 188664 CAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTATGCTCTGCCTGGAATACAA 188723 Query 8019 GCATGTAGTTGAACGTACCAGAGATGCCAAGAGGCATAGCGTCAGAGAAAGAACCTTGAC 8078 ||| ||||||| |||| ||| || || | ||||||| | ||||||||| ||||||| Sbjct 188724 TCATAAAGTTGAAAGTACAAGATATTCCTAAAGGCATACCATCAGAGAAACTTCCTTGAC 188783 Query 8079 CGAAAGGATAGACGAGGAATACAGCAGATGCTGCAGCAACTGGAGCAGAGTATGCTACAC 8138 | | ||| || | | ||| ||||| | || || ||||| ||||| || ||||| ||| Sbjct 188784 CAATAGGGTAAATCAAGAAAACAGCGGTAGCAGCTGCAACAGGAGCTGAATATGCAACAG 188843 Query 8139 AGATCCAGGGACGCATACCTAGACGGTAAGAAAGTTCCCACTCA 8182 ||||| ||||| ||||| ||| || || |||||||||||| Sbjct 188844 TAATCCAAGGACGTATACCCAGATGG-AACTCAGTTCCCACTCA 188886 >seq5 Length=38039368 Score = 127 bits (140), Expect = 3e-24 Identities = 128/165 (78%), Gaps = 1/165 (1%) Strand=Plus/Plus Query 7555 GTTGTGAGCATTACGCTCGTGCATGACTTCCATGCCAAGACCAGCACGGTTGAGCACGTC 7614 || |||||||||||| |||||||| |||||||| ||||| |||||||||| | || Sbjct 16640430 GTGGTGAGCATTACGTTCGTGCATTACTTCCATAGCAAGATTTGCACGGTTGATGATATC 16640489 Query 7615 TGCCCAGGTGTTCAGGACACGACCTTGACCATCAATGATGGACTGGTTGAAGTTGAAACC 7674 ||||| || | | || |||||||| | ||||| | || |||||||| ||||| || Sbjct 16640490 AGCCCAAGTATAAATAACGCGACCTTGGCTATCAACTACAGA-TGGTTGAAATTGAACCC 16640548 Query 7675 GTTGAGGTTGAATGCCATGGTGCTAACACCAAGAGCAGTGAACCA 7719 ||| || ||||| ||||| || |||| ||| | |||||||||||| Sbjct 16640549 GTTTAGATTGAAAGCCATAGTCCTAATACCTAAAGCAGTGAACCA 16640593 >seq11 Length=27185770 Score = 102 bits (112), Expect = 1e-16 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 7534 AGCAGCAAGGTCAAGAGGGAAGTTGTGAGCATTACGCTCGTGCATGACTTCCATGCCAAG 7593 |||||| ||||| ||||||||||||||||||||||| |||||||| |||||||| ||||| Sbjct 25910839 AGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAG 25910898 Query 7594 ACCAGCACGGTTGA 7607 | ||||||||||| Sbjct 25910899 ATTAGCACGGTTGA 25910912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622124706681280