Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq9 172 7e-38 >seq9 Length=31548187 Score = 172 bits (190), Expect = 7e-38 Identities = 321/458 (70%), Gaps = 20/458 (4%) Strand=Plus/Minus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 |||||| ||||| ||||||||||||||||| ||||| || | ||| ||| |||||| Sbjct 1132984 GTAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCAT 1132925 Query 127291 AAAATCAAATGGGTT-----CTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGG 127345 | || || ||||| | ||| | || || ||| ||||| | | |||| Sbjct 1132924 CCAGTCGAACGGGTTGGCGACGTTG---TACATCTTCTTG-CACCCGAG-CGCCATGAGC 1132870 Query 127346 AGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG- 127404 || || || | |||| |||| ||||||| ||| ||| |||||| |||| ||| Sbjct 1132869 AGCCGGTCGGCGACGAACTCGATGTACTGGCTCATGAGCTCGCCGTTCATCCCGACGAGC 1132810 Query 127405 GTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGAT 127464 | || ||||||||||| ||| |||| || |||| |||||||| || || ||||| Sbjct 1132809 GCGACG-GGGAGCGCGTCGCAGACGAACTCCCTCTCGATGTCCACGGCGTCGGCGACGAT 1132751 Query 127465 GGCGTGAATA-GTGTCCACCCCAGGTCTATTGCGTA--AAGTCTT-GAAGAGTTCCACAG 127520 | || | ||| | | || | | ||| | | ||| | || ||| || | Sbjct 1132750 CTCCTGGACGCGTGACTCGTCGAGCT-TGCCGCGGAGGAGGTCGTAGAGGAGG--CAG-G 1132695 Query 127521 CAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTG 127580 | || || ||||||||||||||| ||||||||||| || || |||||| || || | Sbjct 1132694 CGAAGTCGCAGTGGAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCG 1132635 Query 127581 GCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCC 127640 ||||||| || |||||||| | |||||| || || || ||||| || ||||||||||||| Sbjct 1132634 GCATGAGTCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAATGAACCCGAGAAGAAGATCC 1132575 Query 127641 CCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAG 127678 |||| || || ||||| || | || |||||||| ||| Sbjct 1132574 CCTCGACGCAGGCGAAGGCGACGAGGCGCTCGGCGAAG 1132537 Score = 127 bits (140), Expect = 3e-24 Identities = 282/418 (67%), Gaps = 4/418 (1%) Strand=Plus/Plus Query 12690 ACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATG 12749 ||||||| || ||||| || | || ||||| || || || |||| || | |||| Sbjct 31090181 ACGGTGACCTGCCGATCGAACCTCCCAGGGCGAAGAAGCGCCGCGTCGAGCACATCAGGC 31090240 Query 12750 CGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTC 12809 | ||| ||||| |||| |||| || || | | | | || ||||||||||||||| Sbjct 31090241 CTGTTTGTCGCGGCGAGCACAATGACACCGCTATTGCCGGCAAATCCATCCATCTCAGTC 31090300 Query 12810 AAGAGTTGATTGATGGTTTGTTCACGTTCATCA-TTCGCGGGCATACCACCCGCACTGCG 12868 ||||| || || ||||| || || | |||||| ||| | | | | || |||| || Sbjct 31090301 AAGAGCTGGTTAATGGTCTGCTCCCTCTCATCATTTCCCCCTCCGAGC-CCAGCACCACG 31090359 Query 12869 TTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGC 12928 ||| | |||||||| |||||||| |||||||| ||||| || || || | ||| Sbjct 31090360 CTGCCTCCCGACGGCATCAATTTCATCAATGAAGACGATGCAAGGGGCCTTGGCCTTGGC 31090419 Query 12929 AACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATT 12988 || || | || | || || |||||||||||| || |||| ||| || || | Sbjct 31090420 CTTCTCGAACAGGTCCCTGACCCTGGAGGCACCGACACCGACGAACAGCTCAACGAACTC 31090479 Query 12989 GGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAG 13048 || |||| || || ||| || || || || || |||| ||| || || || || Sbjct 31090480 GGACGCGGCGCAGGAGAAGAATGGCACTCCGGCCTCCCCGGCGACGGCACGCGCCAGCAG 31090539 Query 13049 GGTCTTCCCCGTCCCTGGTTTCCCCGCGAGAAGGGCACCACGT-GGGATCCTGGCACC 13105 |||||||| || || || || |||| | |||| | | | |||||| |||| || Sbjct 31090540 TGTCTTCCCGGTTCCGGGCGGGCCGACGAGCA-GGCATCCCTTGGGGATCTTGGCCCC 31090596 Score = 102 bits (112), Expect = 1e-16 Identities = 270/402 (67%), Gaps = 18/402 (4%) Strand=Plus/Plus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 |||||| ||||| ||||||||||||||||| ||||| || | ||| ||| |||||| Sbjct 8707312 GTAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCAT 8707371 Query 127291 AAAATCAAATGGGTT-----CTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGG 127345 | || || ||||| | ||| | || || ||| || || | | ||||| Sbjct 8707372 CCAGTCGAAGGGGTTGGCGACGTTG---TACATCTTCTTG-CAGCCGAG-CGCCATGAGG 8707426 Query 127346 AGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG- 127404 || || || | |||| |||| ||||||| ||| || |||||| |||| ||| Sbjct 8707427 AGGCGGTCGGCGACGAACTCGATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGC 8707486 Query 127405 GTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGAT 127464 | || ||||||||||| ||| |||| || |||| ||||| || || || ||||| Sbjct 8707487 GCGACG-GGGAGCGCGTCGCAGACGAACTCCCTCTCGATGTCGACGGCGTCGGCGACGAT 8707545 Query 127465 GGCGTGAATAGTGTCCACCCCAGGTCTATTGCGTA--AAGTCTT-GAAGAGTTCCACAGC 127521 || | | || | | | | ||| | | ||| | || ||| || || Sbjct 8707546 CTCGCGGACGCGCGCCTCGTCGAGCTTGCCGCGGAGGAGGTCGTAGAGGAGG--CAG-GC 8707602 Query 127522 AAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGG 127581 || || ||| || |||||||| ||||||||||| || || |||||| || || || Sbjct 8707603 GAAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGG 8707662 Query 127582 CATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGA 127623 |||||| ||||||||||| | |||||| || || || || || Sbjct 8707663 CATGAGCCCCCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGA 8707704 Score = 100 bits (110), Expect = 3e-16 Identities = 228/342 (67%), Gaps = 6/342 (2%) Strand=Plus/Plus Query 10504 CCCTTCTATCCACGATCCGTCTATGGCGTCTCAAAGGTTGCGGCACATTGGCTCGTGAAG 10563 |||||| | || || ||| ||| | || | | ||||| || || || ||| | Sbjct 1717448 CCCTTCCACCCCCGCTCCCCCTACGCCGCCGCCAAGGTCGCCGCCCACTGGTACACCGTC 1717507 Query 10564 AATTATCGCGAATCCTATGGTCTCTTTGTGTGCTCCGGTATTCTCTTCAACCACGAGTCA 10623 || || ||||| |||| || ||||| | ||| ||| | ||||||||||||||||| Sbjct 1717508 AACTACCGCGAGGCCTACGGCCTCTTCGCCTGCAACGGCGTGCTCTTCAACCACGAGTCC 1717567 Query 10624 CCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCACCGATGGTATCAAACAAATCGTG 10683 || || || ||| | | ||||| || ||||||||| | || | |||| | Sbjct 1717568 CCACGCCGCGGCGAGAACTTCGTCACCCGCAAGATCACCCGCGCCGTCGGCCGAATCAAG 1717627 Query 10684 GCGGGTG---AGAGGGAGTTCATTGAATTGGGGAACCTCAACGCCGAGAGGGACTGGGGA 10740 | || ||| || || | | || |||||| ||||| |||||||||||| Sbjct 1717628 GTCGGCCTCCAGACCAAGGTCTTCC---TCGGCAACCTCTCCGCCGCCAGGGACTGGGGA 1717684 Query 10741 CACGCCAAGGACTATGTTGAAGCCATGTGGCTCGTACTCCAACAAGAAGAGGCGGACGAA 10800 |||| |||||| || || || ||||||| | | || || || || || | | ||| Sbjct 1717685 TTCGCCGGGGACTACGTCGAGGCAATGTGGCGCATGCTGCAGCAGGACAAGCCCGGCGAC 1717744 Query 10801 TATGTCGTCGCGACGGGGGAGACACACTCCGTCAGGGAGTTC 10842 || |||||||| || | |||| | ||| ||||| ||||||| Sbjct 1717745 TACGTCGTCGCCACCGAGGAGTCCCACACCGTCGAGGAGTTC 1717786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613507107973920