Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26]
12 sequences; 372,860,283 total letters
Query= NC_013668.3
Length=248526
Score E
Sequences producing significant alignments: (Bits) Value
seq9 205 1e-47
>seq9
Length=31548187
Score = 205 bits (226), Expect = 1e-47
Identities = 494/741 (67%), Gaps = 24/741 (3%)
Strand=Plus/Minus
Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708
||||||||| |||||||||||||||| || ||| || ||||| | |||| |||||
Sbjct 1132969 CTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCATCCAGTCGAACGGGTT 1132910
Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768
|||| || |||| | ||||| ||| |||| || ||| || || || ||
Sbjct 1132909 GGCGACGTTGTACATCTTCTTGCACCCGAGCGCCATGAGCAGCCGGTCGGCGACGAACTC 1132850
Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828
|||||| | ||| |||| | ||| ||||| | ||| ||||||||||| || |
Sbjct 1132849 GATGTACTGGCTCATGAGCTCGCCGTTCATCCCGACGAGCGCGACGGGGAGCGCGTCGCA 1132790
Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGT---TCGTA 159885
| |||||| |||| || || || || |||| || |||| | ||| ||| ||||
Sbjct 1132789 GACGAACTCCCTCTCGATGTCCACGGCGTCGGCGACGATCTCCTGGACGCGTGACTCGT- 1132731
Query 159886 CCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCC 159945
| ||||||| | | |||| | | |||||||| || ||||||||||| || ||
Sbjct 1132730 --CGAGCTTGCCGCGGAGGAGGTCGT---AGAGGAGGCAGGCGAAGTCGCAGTGGAGACC 1132676
Query 159946 CTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTT 160005
|||||| || ||||||| ||||||||| | | ||||||||||||||| || ||| ||
Sbjct 1132675 CTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGTCCGCGCTTCTT 1132616
Query 160006 GAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAA-AAGATCCCCTCCACGGCCGCAAACG 160064
|||||| || ||||| ||| || | | | | || ||||||||||| ||| || || |
Sbjct 1132615 GAGCCAGAAGATGGC-GCAGAATGAACCCGAGAAGAAGATCCCCTCGACGCAGGCGAAGG 1132557
Query 160065 CCACGAGCCTCTCACCAAAAGAGGCG-TTGGTGTCATGGGTCCACCTTTTGGCCCATTCA 160123
| ||||| | ||| | || ||| | | | | | | |||| | ||||||| ||
Sbjct 1132556 CGACGAGGCGCTCGGC----GAAGCGCTCGCCGCCGTCGATCCATCGCATGGCCCAGTCG 1132501
Query 160124 GCCTTCTTTGCGATGCACGGC----ATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTC 160179
||| ||||| ||||||| | | |||| |||| || | | ||||| |||
Sbjct 1132500 GCC----TTGCGGCGCACGGCGGGGACGGTGTCGATGGCGCGGAAGAGGCGGTCCTTCTC 1132445
Query 160180 CTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTC 160239
| || ||| || | | ||| ||||||||| || | ||| | || ||
Sbjct 1132444 GACGTCGTCGCGGATGTACGTCTCGAGCAGAAGCGAGTACATCTCCGAGTGGATGTTCTC 1132385
Query 160240 GATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCTCCTGTGTGAA 160299
|||||| ||||| ||| |||||| |||||| |||||| || ||||
Sbjct 1132384 GATGGCGATCTGGAAGCCGTAGAAGGCGCGCGCCTCGGCGACCTGCACGTCGGACATGAA 1132325
Query 160300 CCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTG 160359
||| | || || | || | ||||||| ||| || ||||| || | ||||||
Sbjct 1132324 CCTGGAGGCGAGGTTCTCGAGCACGATGCCGTCGGAGGCGGCGAAGAAGGCGAGCACGTG 1132265
Query 160360 AGAGATGAAATGTCTCTCGTC 160380
|||| ||| || | ||||||
Sbjct 1132264 GGAGACGAAGTGGCGCTCGTC 1132244
Score = 174 bits (192), Expect = 2e-38
Identities = 270/381 (71%), Gaps = 6/381 (2%)
Strand=Plus/Plus
Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708
||||||||| |||||||||||||||| || ||| || ||||| | |||| |||||
Sbjct 8707327 CTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCATCCAGTCGAAGGGGTT 8707386
Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768
|||| || |||| | ||||| ||| || | | ||| || || || ||
Sbjct 8707387 GGCGACGTTGTACATCTTCTTGCAGCCGAGCGCCATGAGGAGGCGGTCGGCGACGAACTC 8707446
Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828
|||||| | ||| | || | ||| || || | ||| ||||||||||| || |
Sbjct 8707447 GATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGCGCGACGGGGAGCGCGTCGCA 8707506
Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCT-GCGAGACACGTTCGTACC 159887
| |||||| |||| || ||||| || |||| || |||| ||| ||| || | |
Sbjct 8707507 GACGAACTCCCTCTCGATGTCGACGGCGTCGGCGACGATCTCGCG-GACGCGCGCCTCGT 8707565
Query 159888 CCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCT 159947
| ||||||| | | |||| | | |||||||| || |||||||||||||| ||||
Sbjct 8707566 CGAGCTTGCCGCGGAGGAGGTCGT---AGAGGAGGCAGGCGAAGTCGCAGTGCAGGCCCT 8707622
Query 159948 CGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTTGA 160007
|||| || ||||||| ||||||||| | | ||||||||||||||| ||| ||| ||||
Sbjct 8707623 CGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGCCCCCGCTTCTTGA 8707682
Query 160008 GCCAAAAAATGGCCGCAAAAG 160028
|||| || |||| |||| |||
Sbjct 8707683 GCCAGAAGATGG-CGCAGAAG 8707702
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 795155080726720
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