Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq6 237 1e-56 seq4 105 5e-17 seq5 98.7 8e-15 >seq6 Length=37594838 Score = 237 bits (262), Expect = 1e-56 Identities = 704/1076 (65%), Gaps = 20/1076 (2%) Strand=Plus/Minus Query 517244 GTTGATTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACT 517303 |||| || || |||||| |||||| || ||||| ||||| || | ||||| ||| Sbjct 35689612 GTTGTCTTGTCTTCGGCAGACACATTCAGGATACCGTTGGCGTCAATGTCAAAGCAGACA 35689553 Query 517304 TCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGA 517363 || |||||||| || || | ||||| ||||| || || | |||| | || || Sbjct 35689552 GTGATCTGAGGGACTCCCCTAGGGGCAGGAGGGATTCCAGACAGCTCAAATTTGCCAAGG 35689493 Query 517364 TTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTT 517423 ||| || || | || | | | |||||||| | | || || || ||| Sbjct 35689492 AGATTGTTGTCCCTGGTCCGTGTCCTCTCACCCTCATAGACCTGAATCAACACACCAGGC 35689433 Query 517424 TGATTATCTGAATAAGTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCT 517482 || ||||| || || || | || || ||| || || |||||| || ||||| || Sbjct 35689432 TGGTTATCGGAGTAGGTGGAGAAGAC-CTGCTCCTTCTTGGTAGGAATGGTGGTGTTCCT 35689374 Query 517483 ATCAATAATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGAC 517542 || | ||||| | ||| || ||||| || | ||||||||| || ||||| || Sbjct 35689373 TGGGATGAGCACTGTCATCACACCTCCCGCTGTCTCGAGACCAAGAGACAGTGGAGTCAC 35689314 Query 517543 ATCAACTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTG 517602 ||||| || | || || || | || || | | ||| ||| ||||| || || Sbjct 35689313 ATCAAGGAGAAGAAGATCCTGCACCTTCTCGTTCCCCTCTCCACTAAGGATAGCAGCCTG 35689254 Query 517603 AATAGCAGCACCATATGCAACAGCTTCATCAGGATTAA--CAGTTTCATTTAGTTTTTTA 517660 | |||||||| ||||| |||||||||||||| |||| | || || |||| || Sbjct 35689253 GACGGCAGCACCGTATGCCACAGCTTCATCAGGGTTAATGCTCTTGCAG--AGTTCCTTC 35689196 Query 517661 CCATTGAAAAAATTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACT 517720 |||||||| |||| ||||| || ||| |||| || | || ||| || ||||| Sbjct 35689195 CCATTGAAGAAATCCTGCAGAAGCTGCTGAACCCTAGGGATTCTAGTTGAACCACCAACA 35689136 Query 517721 AATACAATTTCATGCACCTGTGAT-TTATCCAGTTTTGAATCCAATAAAACTTTTTCAAC 517779 | |||| ||||| || ||| | || |||| |||| |||| | || || || Sbjct 35689135 AGGACAACATCATGGACA-GTGCTCTTGTCCATCTTTGCATCCCTCAGGCACTTCTCCAC 35689077 Query 517780 GGGTTCAAGACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAG 517839 || || | || || || | ||| ||| || || || | ||||| || | Sbjct 35689076 AGGCTCCATACATTTCCTGAAGAGGTCCATGTTAAGCTCCTCAAACCTGGCTCTGGTGAT 35689017 Query 517840 AGTGACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGA 517899 ||| || |||||| || || || | ||||||| |||||| |||||||| | | Sbjct 35689016 GGTGGAATAGAAATCAACACCCTCAAAGAGGGAATCAATTTCAATAGTAGTTTGGGCAGT 35688957 Query 517900 AGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGC 517959 || || || | | || || | |||||||| ||| || || || | || || | | Sbjct 35688956 GGAGGAGAGGGTCCTCTTTGCCCTTTCACATGATGTTCTGAGCCTCCTCAAAGCCCTGG- 35688898 Query 517960 TGATTGATTC--AAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACA 518017 | || | | ||| | |||| ||||||||||| |||| ||| | | || Sbjct 35688897 -GGTTCCCGCTGATATCCTTCTTATGCTTTCTCTTGAACTCTTGGACAAAGTGGTTCACC 35688839 Query 518018 AGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGG 518077 || || || ||||| || || || || | | ||| | || | || ||| | || | Sbjct 35688838 AGGCGGTTGTCAAAGTCCTCCCCACCAAGGTGAGTGTCACCAGCTGTTGCTTTCACCTCA 35688779 Query 518078 AAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAA 518137 |||| || || |||| | | || | |||||| || |||||||| | |||||| Sbjct 35688778 AAAATACCCTCCTCAATGGTAAGGAGGGAGACATCAAAAGTACCACCACCAAGGTCAAAA 35688719 Query 518138 ATAAGTACATTCATTTCT-------TTGTCTTGGTTTTTATCAAGACCATACGCAAAAGC 518190 || || || ||| | || | ||| || || ||||||||||| |||| || Sbjct 35688718 ATGAGCACGTTCTTCTCACCAACACTAGTCGCC-TTCTTGTCAAGACCATAAGCAATTGC 35688660 Query 518191 AGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATC 518250 |||||| ||||| ||||| || || | || |||||||||||| ||||| |||||||| Sbjct 35688659 AGCAGCTGTTGGCTCATTGATGATACGCATAACATTAAGACCCGCAATAACACCTGCATC 35688600 Query 518251 TTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 518306 |||||| || || || || ||||| || || |||||||||||||| | ||| |||| Sbjct 35688599 TTTAGTTGCCTGCCTCTGGGAATCATTGAAGTATGCAGGAACAGTGACAACAGCAT 35688544 Score = 123 bits (136), Expect = 2e-22 Identities = 225/328 (69%), Gaps = 6/328 (2%) Strand=Plus/Minus Query 517985 TTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCC 518044 || |||||||| |||| ||| | | || | || || |||||||||||||| || Sbjct 7773090 TTCCTCTTGAATTCTTGCACAAAGTGGTTGACCATGCGGTTGTCAAAATCTTCACCACCA 7773031 Query 518045 AATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGA 518104 | | || | || | || || | || | || | || || |||| | | || Sbjct 7773030 AGATGGGTGTCACCAGCTGTGGCCTTGACCTCAAAGATACCCTCCTCAATGGTAAGGAGG 7772971 Query 518105 GTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCT--- 518161 | |||||| ||| ||||| || | ||||| || || |||||| | || | Sbjct 7772970 GAAACATCAAAGGTACCACCTCCAAGGTCAAAGATGAGGACATTCTTCTCACCAACGCTG 7772911 Query 518162 -TGG--TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTC 518218 ||| || || ||||||||||| |||| ||| ||||||||||| ||||| || || | | Sbjct 7772910 GTGGCCTTCTTGTCAAGACCATAGGCAATAGCTGCAGCAGTTGGCTCATTGATGATGCGC 7772851 Query 518219 AAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTA 518278 | ||||| ||||||||||| ||| ||||| || ||||| || || || || || || Sbjct 7772850 ATGACATTGAGACCAGCAATCACTCCAGCATCCTTGGTGGCCTGCCTCTGGGAGTCATTG 7772791 Query 518279 AAATATGCAGGAACAGTAATAACGGCAT 518306 || || ||||||||||| | |||||||| Sbjct 7772790 AAGTAGGCAGGAACAGTGACAACGGCAT 7772763 >seq4 Length=26741765 Score = 105 bits (116), Expect = 5e-17 Identities = 138/190 (73%), Gaps = 6/190 (3%) Strand=Plus/Minus Query 518108 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTT 518167 |||||| ||| || || |||| ||||| | ||| | || |||| |||| || | Sbjct 8680937 ACATCAAAGGTACCGCCTCCCAAGTCAAACACAAGAA---TCGTTTCGTTGTTTT---TC 8680884 Query 518168 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 518227 || |||| |||||| |||| | |||||||| |||||||| ||||| | | ||| | Sbjct 8680883 TTCTCAAAACCATAAGCAAGGGATGCAGCAGTCGGTTCATTTATAATGCGGAGAACTTCC 8680824 Query 518228 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 518287 | || ||||| | ||| |||||||| || ||| || ||||| || || || |||||| Sbjct 8680823 AATCCTGCAATACGTCCAGCATCTTTTGTTGCTGTCCTCTGTGAGTCATTGAAGTATGCA 8680764 Query 518288 GGAACAGTAA 518297 |||||||||| Sbjct 8680763 GGAACAGTAA 8680754 >seq5 Length=38039368 Score = 98.7 bits (108), Expect = 8e-15 Identities = 114/154 (74%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 518177 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 518236 ||||| | | ||||||||||||||||||||| || || ||| |||| ||| |||||| Sbjct 34737488 CCATAAGACAGAGCAGCAGCAGTTGGTTCATTGATGATCCTCTGGACATCAAGTCCAGCA 34737547 Query 518237 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 518296 || | || ||||| || || || || | || | ||| |||||||| || ||||| ||| Sbjct 34737548 ATGCGACCAGCATCCTTGGTTGCCTGACGCTGAGCATCATTAAAATAAGCTGGAACTGTA 34737607 Query 518297 ATAACGGCATCAGTTACTTCTTTACCAATATAAG 518330 || ||||| | | || |||||||| |||| Sbjct 34737608 ATCACGGCCTTTGAAACAGTTTTACCAAGGTAAG 34737641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780821804520472