Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq9 132 6e-26 >seq9 Length=31548187 Score = 132 bits (146), Expect = 6e-26 Identities = 118/148 (80%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 |||||||||||| || ||||| || || || || |||||| ||||| |||||||| || Sbjct 1132684 GTGGAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGTCC 1132625 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 |||||||| | ||| | || ||||||||||| || ||||||||||| ||||| || || Sbjct 1132624 GCGCTTCTTGAGCCAGAAGATGGCGCAGAATGAACCCGAGAAGAAGATCCCCTCGACGCA 1132565 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAG 117432 || || || | ||||||||||||||| Sbjct 1132564 GGCGAAGGCGACGAGGCGCTCGGCGAAG 1132537 Score = 118 bits (130), Expect = 1e-21 Identities = 273/406 (67%), Gaps = 4/406 (1%) Strand=Plus/Plus Query 9192 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9251 ||||| || | || || ||||| ||||| | || || | |||| | || |||||| Sbjct 31090193 CGATCGAACCTCCCAGGGCGAAGAAGCGCCGCGTCGAGCACATCAGGCCTGTTTGTCGCG 31090252 Query 9252 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9311 |||| |||| | ||| | | |||| ||||||||||| ||||| || |||||| Sbjct 31090253 GCGAGCACAATGACACCGCTATTGCCGGCAAATCCATCCATCTCAGTCAAGAGCTGGTTA 31090312 Query 9312 ATAGTTTGTTCCCGTTCATCATT-CGCTGGCATACCACCAGCACTGCGTTGCTTTCCCAC 9370 || || || |||| |||||||| | | | | | ||||||| || ||| | || || Sbjct 31090313 ATGGTCTGCTCCCTCTCATCATTTCCCCCTCCGAGC-CCAGCACCACGCTGCCTCCCGAC 31090371 Query 9371 GGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAG 9430 ||||||||| |||||||||||||| || || || || | ||| | || || || Sbjct 31090372 GGCATCAATTTCATCAATGAAGACGATGCAAGGGGCCTTGGCCTTGGCCTTCTCGAACAG 31090431 Query 9431 ATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACA 9490 || | ||||| ||| || ||||| || |||| ||| || || | | |||| || Sbjct 31090432 GTCCCTGACCCTGGAGGCACCGACACCGACGAACAGCTCAACGAACTCGGACGCGGCGCA 31090491 Query 9491 TTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGT 9550 || ||| || || | || || || | ||| || || || || ||||| || || Sbjct 31090492 GGAGAAGAATGGCACTCCGGCCTCCCCGGCGACGGCACGCGCCAGCAGTGTCTTCCCGGT 31090551 Query 9551 ACCTGGCTTACCCGCGAGGAGGGCACCCCGT-GGAATCTTGGCGCC 9595 || ||| || |||| | |||| ||| | || |||||||| || Sbjct 31090552 TCCGGGCGGGCCGACGAGCA-GGCATCCCTTGGGGATCTTGGCCCC 31090596 Score = 104 bits (114), Expect = 3e-17 Identities = 229/340 (67%), Gaps = 14/340 (4%) Strand=Plus/Plus Query 9224 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAA 9283 ||| ||||||||| | | || || || || || |||| || || || | ||||| Sbjct 28185836 ATCCAGGATATCAGCCCTGTTGGTGGCAGCAATAACAATGATTCCAGTGTTCCCCTCAAA 28185895 Query 9284 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 9343 |||||||||||| |||| | || || | ||| || |||| ||||||||| | Sbjct 28185896 ACCATCCATCTCAGTCAGCAACTGATTCAAAGTCTGCTCCCTTTCATCATTTCC------ 28185949 Query 9344 ACCACCAGCAC-TG-----CGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAAT 9397 ||||||| || || | |||| | || || |||||||| ||||||| || || || Sbjct 28185950 ACCACCAATACCTGTCCCTCTTTGCCTCCCAACAGCATCAATTTCATCAACAAATACTAT 28186009 Query 9398 ACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACC 9457 || || ||| || || | | |||||||| ||||||| ||| || || || Sbjct 28186010 GCAAGGAGCATTCTCCTTTGCCTTCTTGAAGAGATCACGAACCCGGGAGGCACCAACTCC 28186069 Query 9458 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCAC 9516 ||||||||||||||||| | | | | | || | || || || ||| || ||| | Sbjct 28186070 GACAAACATCTCCACAAACTCAGATCCTG-ATATCGAGAAAAACGGCACACCAGCTTCCC 28186128 Query 9517 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 | ||||| || ||| || | ||||||||| || || || Sbjct 28186129 CTGCAATAGCCTTGGCAAGCAAAGTCTTACCAGTTCCAGG 28186168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589980711502880