Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq4 271 9e-68 seq5 114 2e-20 seq11 89.7 6e-13 >seq4 Length=26741765 Score = 271 bits (300), Expect = 9e-68 Identities = 276/360 (77%), Gaps = 0/360 (0%) Strand=Plus/Plus Query 180375 GAAACCACTGAAACTGAGTCCCAGAACTACGGTTACAAGTTTGGTCAAGAAGAAGAGACC 180434 ||||||||||||| || || || | ||||||| ||||||||||| |||||||| Sbjct 12116219 GAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAGACT 12116278 Query 180435 TACAACATCGTTGCTGCACATGGATACTTCGGTCGTCTGATCTTCCAGTATGCATCGTTC 180494 || || || || || || ||||| || || || || | |||||||| ||||| || Sbjct 12116279 TATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTTT 12116338 Query 180495 AACAACTCCCGTTCACTTCACTTCTTCCTGGCAGCATGGCCTGTCGTTGGCATCTGGTTC 180554 |||||||| ||||| | ||||||||| |||| || |||||||| || || || |||||| Sbjct 12116339 AACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATTTGGTTC 12116398 Query 180555 ACTGCACTGGGCGTAAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCC 180614 ||||| | || | || || ||||| ||||| || ||||| ||||| |||||||| || Sbjct 12116399 ACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTCAACCAATCT 12116458 Query 180615 ATCATTGATGGTCAAGGTCGTGTGCTCAACACTTGGGCAGACGTACTCAACCGCGCTGGT 180674 | ||||| | |||||||| || | || |||||||| || | ||||||| ||| | Sbjct 12116459 GTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGTGCTAAT 12116518 Query 180675 CTGGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTGGCAGCT 180734 || ||||||||||| |||||||| |||||||||||||||||||| || ||||| || ||| Sbjct 12116519 CTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCT 12116578 Score = 223 bits (246), Expect = 4e-53 Identities = 294/405 (73%), Gaps = 6/405 (1%) Strand=Plus/Minus Query 180086 TGAGTGGGAACTTTCTT--ATCGCTTGGGTATGCGCCCCTGGATCTGCGTAGCATATTCT 180143 |||||||||||| || ||| ||||||| || || ||||| || |||||||| Sbjct 188886 TGAGTGGGAACTGAGTTCCATC---TGGGTATACGTCCTTGGATTACTGTTGCATATTCA 188830 Query 180144 GCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCATTC 180203 ||||| || || || || | ||||| ||| | | || ||| | |||||||| ||| Sbjct 188829 GCTCCTGTTGCAGCTGCTACCGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTC 188770 Query 180204 TCTGACGCAATGCCCCTCGGCATTTCTGGCACCTTCAACTACATGCTTGTTTTCCAAGCA 180263 ||||| | ||||| | || || ||| | || ||||||| ||| |||| ||||| ||| Sbjct 188769 TCTGATGGTATGCCTTTAGGAATATCTTGTACTTTCAACTTTATGATTGTATTCCAGGCA 188710 Query 180264 GAGCACAACATCCTGATGCACCCCTTCCACATGCTGGGAGTAGCAGGTGTCTTCGGCGGT 180323 ||||| |||||||| ||||| || || |||||| | || ||||| ||||| || ||||| Sbjct 188709 GAGCATAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTATGCGGT 188650 Query 180324 TCACTGTTCTCC-GCAATGCACGGTTCACTGGTTACCTCTTCACTGGTTCGTGAAACCAC 180382 || || ||| || ||||| ||||| |||| |||||| || | | |||||||| Sbjct 188649 TCCCTATTCAAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGTTCAGGGAAACCAC 188590 Query 180383 TGAAACTGAGTCCCAGAACTACGGTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACAT 180442 ||||| || || || | ||||||| ||||||||||| |||||||| || || || Sbjct 188589 TGAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAGACTTATAATAT 188530 Query 180443 CGTTGCTGCACATGGATACTTCGGTCGTCTGATCTTCCAGTATGC 180487 || || || ||||| || || || || | |||||||| ||||| Sbjct 188529 TGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGC 188485 >seq5 Length=38039368 Score = 114 bits (126), Expect = 2e-20 Identities = 125/165 (76%), Gaps = 1/165 (1%) Strand=Plus/Minus Query 180549 TGGTTCACTGCACTGGGCGTAAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAAC 180608 ||||||||||| | || | || || ||||| ||||| || ||||| ||||| |||||| Sbjct 16640593 TGGTTCACTGCTTTAGGTATTAGGACTATGGCTTTCAATCTAAACGGGTTCAATTTCAAC 16640534 Query 180609 CAGTCCATCATTGATGGTCAAGGTCGTGTGCTCAACACTTGGGCAGACGTACTCAACCGC 180668 || || | ||||| | |||||||| || | | |||||||| || | ||||||| Sbjct 16640533 CA-TCTGTAGTTGATAGCCAAGGTCGCGTTATTTATACTTGGGCTGATATCATCAACCGT 16640475 Query 180669 GCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAATGCTCACAAC 180713 || ||| | ||||||||| |||||||| |||||||||||| || Sbjct 16640474 GCAAATCTTGCTATGGAAGTAATGCACGAACGTAATGCTCACCAC 16640430 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 141254 TTCCTCAGTAGCTCAGCGGCAGAGCCGACGACTGTTAATCGTCTGGTCGTAGGTTCAAAT 141313 |||||||||||||||| || ||||| | || |||||| | |||||||||||||| ||| Sbjct 822149 TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGTTGTTAACTGACTGGTCGTAGGTTCGAAT 822090 Query 141314 CCTACCTGGGGAG 141326 ||||| ||||||| Sbjct 822089 CCTACTTGGGGAG 822077 >seq11 Length=27185770 Score = 89.7 bits (98), Expect = 6e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 180661 TCAACCGCGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCAC 180720 ||||||| ||| ||| ||||||||||| |||||||| |||||||||||||||||||| | Sbjct 25910912 TCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTC 25910853 Query 180721 TTGACCTGGCAGCT 180734 | ||||| || ||| Sbjct 25910852 TAGACCTAGCTGCT 25910839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610396708440480