Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq4 212 7e-50 seq1 120 4e-22 >seq4 Length=26741765 Score = 212 bits (234), Expect = 7e-50 Identities = 275/379 (73%), Gaps = 1/379 (0%) Strand=Plus/Minus Query 169765 GGAATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCTGCATTCGCTGTA 169824 || || ||||||||||| ||||||||| || || || || | ||||| |||||| Sbjct 188862 GGTATACGTCCTTGGATTACTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACCGCTGTT 188803 Query 169825 TTCTTAGTATACCCATTTGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCA 169884 ||||| | ||||| ||||||| || ||||||||||||||||| |||| || || Sbjct 188802 TTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCT 188743 Query 169885 GGTACTTTCAACTTTATGTTCGTTTTCCAAGCAGAGCATAACATTCTAATGCATCCTTTC 169944 ||||||||||||||||| | || ||||| |||||||||||||| || |||||||| || Sbjct 188742 TGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGCATAACATCCTTATGCATCCATTT 188683 Query 169945 CACATGGCAGGAGTAGCAGGAATGTTCGGAGGATCTTTATTC-TCAGCAATGCATGGTTC 170003 |||||| ||| ||||| || | || | || || ||||| || ||||||||||| Sbjct 188682 CACATGTTAGGTGTAGCTGGTGTATTATGCGGTTCCCTATTCAAGTGCTATGCATGGTTC 188623 Query 170004 ACTTGTTACTTCATCTCTAATCAGAGAAACAACAGAGCAAGAGTCACAGAACTATGGTTA 170063 | || || || | | |||| ||||| || || | || || || | ||||| Sbjct 188622 TTTGGTAACCTCTAGTTTGTTCAGGGAAACCACTGAAAACGAATCTGCTAATGAGGGTTA 188563 Query 170064 TAAGTTCGGACAAGAAGAAGAAACATACAACATAGTAGCAGCACACGGTTACTTTGGTCG 170123 | || || ||||| ||||| || || || || || || || || ||||| ||||| || Sbjct 188562 CAGATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCG 188503 Query 170124 TCTTATCTTCCAGTATGCT 170142 | |||||||| |||||| Sbjct 188502 ATTAATCTTCCAATATGCT 188484 Score = 163 bits (180), Expect = 3e-35 Identities = 234/327 (72%), Gaps = 2/327 (1%) Strand=Plus/Plus Query 170059 GGTTATAAGTTCGGACAAGAAGAAGAAACATACAACATAGTAGCAGCACACGGTTACTTT 170118 ||||| | || || ||||| ||||| || || || || || || || || ||||| ||| Sbjct 12116249 GGTTACAGATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTT 12116308 Query 170119 GGTCGTCTTATCTTCCAGTATGCTTCATTCAACAACTCAAGAAGTCTACACTTCTTCCTA 170178 || || | |||||||| |||||| || |||||||| | | ||||||||||| | Sbjct 12116309 GGCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTG 12116368 Query 170179 GCAGTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGCACAATGGCATTC 170238 || | || ||||| ||| | | ||||| || || | ||||| | || ||||| ||| Sbjct 12116369 GCTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTC 12116428 Query 170239 AACTTGAATGGTTTCAACTTTAACCAATCAGTTGTTGAT-GCTAACGGAAAAATCGTCCC 170297 || | || || ||||| || |||||||| || |||||| || || || | | Sbjct 12116429 AATCTAAACGGATTCAATTTCAACCAATCTGTAGTTGATAGCCAA-GGTCGCGTTATTAA 12116487 Query 170298 AACATGGGGTGATGTTCTAAACAGAGCAAACTTGGGTATGGAAGTTATGCATGAAAGAAA 170357 || |||| |||| | | ||| | || || | ||||||||||| ||||| ||| | || Sbjct 12116488 TACTTGGGCTGATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAA 12116547 Query 170358 TGCACACAACTTCCCACTAGACCTAGC 170384 ||| ||||||||||| ||||||||||| Sbjct 12116548 TGCTCACAACTTCCCTCTAGACCTAGC 12116574 >seq1 Length=46529941 Score = 120 bits (132), Expect = 4e-22 Identities = 143/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 170529 TTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTTGTATTCATAGGATGGTCTGGT 170588 |||||| || | |||||||||||| || || |||||||| || ||||||||||||| Sbjct 26428812 TTTGATATTATGGACGACTGGTTACGAAGGGACCGTTTTGTTTTTGTAGGATGGTCTGGC 26428753 Query 170589 CTTTTACTTCTGCCTTGTGCATACCTATCAATCGGTGGTTGGTTCTTAGGGACTACCTTC 170648 || || ||| | |||||||| || | | | || |||||||| |||||| || || Sbjct 26428752 CTATTGCTTTTTCCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTT 26428693 Query 170649 GTTACATCATGGTATACACATGGTGTTGCTTCCTCATATCTTGAGGGATGTAACTTCCTA 170708 || || || |||||||| ||||| | || || ||| | || || || || ||| || Sbjct 26428692 GTAACTTCTTGGTATACCCATGGATTGGCGAGTTCCTATTTGGAAGGTTGCAATTTCTTA 26428633 Query 170709 ACAGCAGCAGTTTC 170722 || ||||||||||| Sbjct 26428632 ACCGCAGCAGTTTC 26428619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579212713118080