Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= NC_015281.1 Length=179563 Score E Sequences producing significant alignments: (Bits) Value seq4 244 1e-59 >seq4 Length=26741765 Score = 244 bits (270), Expect = 1e-59 Identities = 272/363 (75%), Gaps = 0/363 (0%) Strand=Plus/Plus Query 168487 AGAGAGACGACTGAAACCGAATCCCAAAACTACGGTTACAAGTTCGGACAAGAAGAAGAA 168546 || || || ||||||| |||||| || | ||||||| || || ||||| ||||| Sbjct 12116216 AGGGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAG 12116275 Query 168547 ACATACAACATCGTAGCCGCTCATGGTTACTTCGGTCGTTTGATCTTCCAATACGCTTCA 168606 || || || || || |||||||||||||| || || || || ||||||||||| ||| Sbjct 12116276 ACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGT 12116335 Query 168607 TTCAACAACTCCCGCTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGG 168666 || |||||||| || || || ||||||||| | ||||| |||||||| || || || ||| Sbjct 12116336 TTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATTTGG 12116395 Query 168667 TTCACCGCCCTTGGCGTCTCCACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAG 168726 ||||| || | || | || ||||| ||||| || ||||| ||||| |||||||| Sbjct 12116396 TTCACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTCAACCAA 12116455 Query 168727 TCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTTCTGAACCGCGCT 168786 || | ||||| | || ||||| || | || || ||||| ||| | | ||||| ||| Sbjct 12116456 TCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGTGCT 12116515 Query 168787 GGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGATCTTGCT 168846 ||| ||||||||||| ||||| || ||||| || ||||||||||| || || || ||| Sbjct 12116516 AATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCT 12116575 Query 168847 GCT 168849 ||| Sbjct 12116576 GCT 12116578 Score = 206 bits (228), Expect = 3e-48 Identities = 274/379 (72%), Gaps = 1/379 (0%) Strand=Plus/Minus Query 168226 GGTATGCGTCCATGGATCTGTGTTGCATACTCTGCACCAGTCGCTGCAGCGAGTGCAGTA 168285 ||||| ||||| ||||| ||||||||| || || || || || || || | || || Sbjct 188862 GGTATACGTCCTTGGATTACTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACCGCTGTT 188803 Query 168286 TTCCTAGTGTATCCTTTCGGTCAAGGTAGTTTCTCTGATGCAATGCCACTCGGAATCTCA 168345 ||| | | || ||| | |||||||| ||||||||||||| ||||| | ||||| || Sbjct 188802 TTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCT 188743 Query 168346 GGAACATTCAACTACATGTTGGTCTTCCAAGCTGAGCACAATATTCTCATGCATCCCTTC 168405 | || ||||||| ||| | || ||||| || ||||| || || || |||||||| || Sbjct 188742 TGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGCATAACATCCTTATGCATCCATTT 188683 Query 168406 CATATGCTCGGCGTTGCTGGGGTATTTGGTGGCAGTTTGTT-TAGTGCTATGCACGGAAG 168464 || ||| | || || ||||| ||||| | || | || ||||||||||| || Sbjct 188682 CACATGTTAGGTGTAGCTGGTGTATTATGCGGTTCCCTATTCAAGTGCTATGCATGGTTC 188623 Query 168465 TTTGGTTACTTCTTCTCTCGTTAGAGAGACGACTGAAACCGAATCCCAAAACTACGGTTA 168524 |||||| || ||| | | | || || || ||||||| |||||| || | ||||| Sbjct 188622 TTTGGTAACCTCTAGTTTGTTCAGGGAAACCACTGAAAACGAATCTGCTAATGAGGGTTA 188563 Query 168525 CAAGTTCGGACAAGAAGAAGAAACATACAACATCGTAGCCGCTCATGGTTACTTCGGTCG 168584 || || || ||||| ||||| || || || || || |||||||||||||| || || || Sbjct 188562 CAGATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCG 188503 Query 168585 TTTGATCTTCCAATACGCT 168603 || ||||||||||| ||| Sbjct 188502 ATTAATCTTCCAATATGCT 188484 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 574473513828960