Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= NC_015282.1 Length=174079 Score E Sequences producing significant alignments: (Bits) Value seq4 275 7e-69 seq11 89.7 6e-13 >seq4 Length=26741765 Score = 275 bits (304), Expect = 7e-69 Identities = 307/405 (76%), Gaps = 4/405 (1%) Strand=Plus/Minus Query 164123 TGAGTGGGAACTGTCTTACCGTCTTGGTATGCGTCCTTGGATTTGTGTTGCTTACTCTGC 164182 ||||||||||||| || || ||| ||||| |||||||||||| |||||| || || || Sbjct 188886 TGAGTGGGAACTGAGTT-CCATCTGGGTATACGTCCTTGGATTACTGTTGCATATTCAGC 188828 Query 164183 ACCCGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCGTTCTC 164242 || |||||||| || |||| || ||| || | || ||| | |||||||| ||||| Sbjct 188827 TCCTGTTGCAGCTGCTACCGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTC 188768 Query 164243 TGACGCAATGCCCCTGGGCATCTCTGGCACCTTCAACTACATGTTGGTGTTCCAAGCAGA 164302 ||| | ||||| | || || ||| | || ||||||| ||| | || ||||| ||||| Sbjct 188767 TGATGGTATGCCTTTAGGAATATCTTGTACTTTCAACTTTATGATTGTATTCCAGGCAGA 188708 Query 164303 GCACAACATCCTGATGCACCCCTTCCATATGCTCGGCGTTGCTGGCGTATTTGGCGGTTC 164362 ||| |||||||| ||||| || || || ||| | || || ||||| ||||| ||||||| Sbjct 188707 GCATAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTATGCGGTTC 188648 Query 164363 TCTGTTC-AGTGCAATGCACGGTTCTCTGGTTACTTCTTCGCTGGTTC-GTGAAACCACC 164420 || ||| ||||| ||||| |||||| |||| || || | | | |||| | |||||||| Sbjct 188647 CCTATTCAAGTGCTATGCATGGTTCTTTGGTAACCTC-TAGTTTGTTCAGGGAAACCACT 188589 Query 164421 GAAACTGAGTCCCAGAACTATGGTTACAAGTTTGGTCAAGAAGAAGAAACATACAACATT 164480 |||| || || || | ||||||| ||||||||||| ||||| || || || ||| Sbjct 188588 GAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAGACTTATAATATT 188529 Query 164481 GTTGCCGCTCACGGTTACTTTGGTCGTCTGATCTTCCAATACGCT 164525 || |||||||| ||||| ||||| || | ||||||||||| ||| Sbjct 188528 GTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCT 188484 Score = 275 bits (304), Expect = 7e-69 Identities = 277/360 (77%), Gaps = 0/360 (0%) Strand=Plus/Plus Query 164412 GAAACCACCGAAACTGAGTCCCAGAACTATGGTTACAAGTTTGGTCAAGAAGAAGAAACA 164471 |||||||| |||| || || || | ||||||| ||||||||||| ||||| || Sbjct 12116219 GAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAGACT 12116278 Query 164472 TACAACATTGTTGCCGCTCACGGTTACTTTGGTCGTCTGATCTTCCAATACGCTTCATTC 164531 || || ||||| |||||||| ||||| ||||| || | ||||||||||| ||| || Sbjct 12116279 TATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTTT 12116338 Query 164532 AACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTTGGCATCTGGTTC 164591 |||||||| ||||| || ||||||||| | ||||| |||||||| || || || |||||| Sbjct 12116339 AACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATTTGGTTC 12116398 Query 164592 ACCGCACTTGGTGTTTCCACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCC 164651 || || | ||| || || ||||| ||||| || ||||| ||||| |||||||| || Sbjct 12116399 ACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTCAACCAATCT 12116458 Query 164652 ATCATCGATGGTCAGGGTCGTGTGCTCAACACTTGGGCAGACGTTCTCAACCGCGCTGGT 164711 | | ||| | || ||||| || | || |||||||| || | ||||||| ||| | Sbjct 12116459 GTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGTGCTAAT 12116518 Query 164712 CTGGGTATGGAAGTTATGCACGAGCGTAACGCTCACAACTTCCCTCTGGATCTCGCTGCT 164771 || ||||||||||| |||||||| ||||| ||||||||||||||||| || || |||||| Sbjct 12116519 CTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCT 12116578 >seq11 Length=27185770 Score = 89.7 bits (98), Expect = 6e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 164698 TCAACCGCGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAACGCTCACAACTTCCCTC 164757 ||||||| ||| ||| ||||||||||| |||||||| ||||| |||||||||||||||| Sbjct 25910912 TCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTC 25910853 Query 164758 TGGATCTCGCTGCT 164771 | || || |||||| Sbjct 25910852 TAGACCTAGCTGCT 25910839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556924716461280