Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= NC_015283.1 Length=176428 Score E Sequences producing significant alignments: (Bits) Value seq4 255 7e-63 seq11 82.4 9e-11 >seq4 Length=26741765 Score = 255 bits (282), Expect = 7e-63 Identities = 289/386 (75%), Gaps = 1/386 (0%) Strand=Plus/Minus Query 168851 CTAGGTATGAGACCTTGGATCTGTGTTGCTTATTCAGCACCAGTATCTGCAGCATTTGCA 168910 || ||||| | |||||||| |||||| |||||||| || || | || || || Sbjct 188865 CTGGGTATACGTCCTTGGATTACTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACCGCT 188806 Query 168911 GTATTCCTTGTATACCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGGAATT 168970 || ||| | | ||||| ||||||| || ||||||||||||||||||| ||||||| Sbjct 188805 GTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATA 188746 Query 168971 TCTGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCATCCC 169030 ||| | || |||||||| ||| | |||||||| |||||||| ||||| ||||||||||| Sbjct 188745 TCTTGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGCATAACATCCTTATGCATCCA 188686 Query 169031 TTCCATATGGCAGGAGTAGCAGGTATGTTCGGTGGATCTCTATTC-TCCGCAATGCATGG 169089 || || ||| ||| ||||| ||| | || | || || |||||| || |||||||| Sbjct 188685 TTTCACATGTTAGGTGTAGCTGGTGTATTATGCGGTTCCCTATTCAAGTGCTATGCATGG 188626 Query 169090 TTCACTTGTAACATCTTCTCTAATCAGAGAGACTACTGAGGAAGAATCTCAGAACTATGG 169149 ||| | ||||| ||| | | |||| || || ||||| | |||||| || | || Sbjct 188625 TTCTTTGGTAACCTCTAGTTTGTTCAGGGAAACCACTGAAAACGAATCTGCTAATGAGGG 188566 Query 169150 TTACAAGTTCGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGCACATGGATACTTCGG 169209 ||||| || |||||||| ||||| || ||||||||||| || || ||||| || || || Sbjct 188565 TTACAGATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTTGG 188506 Query 169210 TAGATTAATCTTCCAGTATGCAAGTT 169235 ||||||||||||| ||||| |||| Sbjct 188505 CCGATTAATCTTCCAATATGCTAGTT 188480 Score = 219 bits (242), Expect = 5e-52 Identities = 264/359 (74%), Gaps = 0/359 (0%) Strand=Plus/Plus Query 169115 AGAGAGACTACTGAGGAAGAATCTCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAA 169174 || || || ||||| | |||||| || | ||||||| || |||||||| ||||| Sbjct 12116216 AGGGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAG 12116275 Query 169175 ACCTATAATATTGTTGCAGCACATGGATACTTCGGTAGATTAATCTTCCAGTATGCAAGT 169234 || ||||||||||| || || ||||| || || || ||||||||||||| ||||| ||| Sbjct 12116276 ACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGT 12116335 Query 169235 TTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGCAGTGTTCCCAGTTGTATGTGTATGG 169294 || |||||||| | | | ||||||||| | || | | || || ||| | | ||| Sbjct 12116336 TTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATTTGG 12116395 Query 169295 TTAACCTCTATGGGTATCTGTACAATGGCATTCAACTTGAACGGATTTAACTTTAACCAA 169354 || || || | ||||| |||| ||||| ||||| | |||||||| || || |||||| Sbjct 12116396 TTCACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTCAACCAA 12116455 Query 169355 TCAGTTGTAGATGTTAACGGTAAGATCATTCCTACATGGGGTGACGTACTTAACAGAGCA 169414 || || || ||| | ||| | ||| ||| |||| ||| | | ||| | || Sbjct 12116456 TCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGTGCT 12116515 Query 169415 AACCTTGGTATGGAAGTAATGCATGAGCGTAACGCTCACAACTTCCCACTAGACTTAGC 169473 || |||||||||||||||||||| || ||||| |||||||||||||| |||||| |||| Sbjct 12116516 AATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGC 12116574 >seq11 Length=27185770 Score = 82.4 bits (90), Expect = 9e-11 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 169406 AACAGAGCAAACCTTGGTATGGAAGTAATGCATGAGCGTAACGCTCACAACTTCCCACTA 169465 ||| | || || |||||||||||||||||||| || ||||| |||||||||||||| ||| Sbjct 25910910 AACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTA 25910851 Query 169466 GACTTAGC 169473 ||| |||| Sbjct 25910850 GACCTAGC 25910843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564441515333760