Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26]
12 sequences; 372,860,283 total letters
Query= NC_015284.1
Length=183806
Score E
Sequences producing significant alignments: (Bits) Value
seq4 203 4e-47
seq1 111 2e-19
seq9 89.7 6e-13
>seq4
Length=26741765
Score = 203 bits (224), Expect = 4e-47
Identities = 273/379 (72%), Gaps = 1/379 (0%)
Strand=Plus/Minus
Query 172183 GGTATGAGACCATGGATATGTGTAGCATATTCAGCACCTGTATCAGCAGCATTTGCTGTG 172242
||||| | || ||||| ||| ||||||||||| ||||| |||| || |||||
Sbjct 188862 GGTATACGTCCTTGGATTACTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACCGCTGTT 188803
Query 172243 TTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCA 172302
||| | | || || | ||||| || ||||||||||||||||| |||| || ||
Sbjct 188802 TTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCT 188743
Query 172303 GGTACGTTCAACTTTATGTTCGTGTTCCAAGCAGAGCATAACATTCTAATGCATCCTTTC 172362
|||| |||||||||||| | || ||||| |||||||||||||| || |||||||| ||
Sbjct 188742 TGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGCATAACATCCTTATGCATCCATTT 188683
Query 172363 CACATGGCAGGAGTAGCAGGAATGTTTGGAGGATCTTTATTC-TCAGCAATGCACGGTTC 172421
|||||| ||| ||||| || | || | || || ||||| || ||||| |||||
Sbjct 188682 CACATGTTAGGTGTAGCTGGTGTATTATGCGGTTCCCTATTCAAGTGCTATGCATGGTTC 188623
Query 172422 TTTAGTTACATCTTCTCTAATCAGAGAGACAACTGAAGCAGAATCACAGAACTACGGATA 172481
||| || || ||| | | |||| || || |||||| ||||| || | || ||
Sbjct 188622 TTTGGTAACCTCTAGTTTGTTCAGGGAAACCACTGAAAACGAATCTGCTAATGAGGGTTA 188563
Query 172482 CAAGTTCGGACAAGAAGAAGAAACATACAACATAGTAGCAGCACACGGTTACTTTGGTCG 172541
|| || || ||||| ||||| || || || || || || || || ||||| ||||| ||
Sbjct 188562 CAGATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCG 188503
Query 172542 TCTTATCTTCCAGTATGCT 172560
| |||||||| ||||||
Sbjct 188502 ATTAATCTTCCAATATGCT 188484
Score = 190 bits (210), Expect = 2e-43
Identities = 262/364 (72%), Gaps = 2/364 (1%)
Strand=Plus/Plus
Query 172444 AGAGAGACAACTGAAGCAGAATCACAGAACTACGGATACAAGTTCGGACAAGAAGAAGAA 172503
|| || || |||||| ||||| || | || |||| || || ||||| |||||
Sbjct 12116216 AGGGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAG 12116275
Query 172504 ACATACAACATAGTAGCAGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCT 172563
|| || || || || || || || ||||| ||||| || | |||||||| |||||| |
Sbjct 12116276 ACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGT 12116335
Query 172564 TTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGCAGTTTTCCCTGTTGTATGTGTATGG 172623
|| |||||||| | | | ||||||||| | || | || ||||| ||| | | |||
Sbjct 12116336 TTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATTTGG 12116395
Query 172624 TTAACCTCTATGGGTATCTGTACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAA 172683
|| || || | ||||| |||| ||||| ||||| || ||||| ||||| |||||||||
Sbjct 12116396 TTCACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTCAACCAA 12116455
Query 172684 TCAGTTGTAGAT-GCTAACGGTAAGATTGTTCCTACATGGGGTGACGTTCTTAACAGAGC 172742
|| || || ||| || || ||| || || ||| |||| ||| | | ||| | ||
Sbjct 12116456 TCTGTAGTTGATAGCCAA-GGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGTGC 12116514
Query 172743 AAACCTAGGTATGGAAGTTATGCATGAAAGAAATGCACACAACTTCCCATTAGACCTTGC 172802
|| || ||||||||||| ||||| ||| | ||||| ||||||||||| ||||||| ||
Sbjct 12116515 TAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGC 12116574
Query 172803 TTCT 172806
| ||
Sbjct 12116575 TGCT 12116578
>seq1
Length=46529941
Score = 111 bits (122), Expect = 2e-19
Identities = 141/194 (73%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 172951 TTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 173010
|||||| || | |||||||||||| || || ||||| || || | |||||||||||
Sbjct 26428812 TTTGATATTATGGACGACTGGTTACGAAGGGACCGTTTTGTTTTTGTAGGATGGTCTGGC 26428753
Query 173011 CTTTTACTTCTACCTTGTGCTTACCTTTCTATCGGTGGTTGGTTCTTAGGAACTACCTTC 173070
|| || ||| | ||||||||||| | || | || |||||||| ||| || || ||
Sbjct 26428752 CTATTGCTTTTTCCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTT 26428693
Query 173071 GTTACATCATGGTATACACATGGTATTGCATCTTCATATCTTGAAGGAGCAAACTTTTTA 173130
|| || || |||||||| ||||| | || ||| ||| | ||||| || || |||
Sbjct 26428692 GTAACTTCTTGGTATACCCATGGATTGGCGAGTTCCTATTTGGAAGGTTGCAATTTCTTA 26428633
Query 173131 ACAGCAGCAGTCTC 173144
|| |||||||| ||
Sbjct 26428632 ACCGCAGCAGTTTC 26428619
Score = 89.7 bits (98), Expect = 6e-13
Identities = 72/87 (83%), Gaps = 0/87 (0%)
Strand=Plus/Plus
Query 159693 TGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCACATGGAGGTGG 159752
||| |||||||| || || || ||| | || ||||||||||| ||||||||||| || ||
Sbjct 32083394 TGGAGCAGATGTTTGCCACCTTAACCTTCACAAGACATTCTGCATTCCACATGGTGGGGG 32083453
Query 159753 AGGTCCTGGCGTAGGTCCTATTGGTGT 159779
|||||||| | ||||||||||||||
Sbjct 32083454 TGGTCCTGGAATGGGTCCTATTGGTGT 32083480
>seq9
Length=31548187
Score = 89.7 bits (98), Expect = 6e-13
Identities = 72/87 (83%), Gaps = 0/87 (0%)
Strand=Plus/Minus
Query 159693 TGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCACATGGAGGTGG 159752
||| |||||||| || || || ||| | || ||||||||||| ||||||||||| || ||
Sbjct 24620784 TGGAGCAGATGTTTGCCACCTTAACCTTCACAAGACATTCTGCATTCCACATGGTGGGGG 24620725
Query 159753 AGGTCCTGGCGTAGGTCCTATTGGTGT 159779
|||||||| | ||||||||||||||
Sbjct 24620724 TGGTCCTGGAATGGGTCCTATTGGTGT 24620698
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588051111792320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |