Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= NC_015285.1 Length=174285 Score E Sequences producing significant alignments: (Bits) Value seq4 255 7e-63 >seq4 Length=26741765 Score = 255 bits (282), Expect = 7e-63 Identities = 300/403 (74%), Gaps = 2/403 (0%) Strand=Plus/Minus Query 162723 TGAATGGGAACTCTCTTACCGTCTTGGTATGCGTCCATGGATCTGCGTAGCATACTCTGC 162782 ||| |||||||| || || ||| ||||| ||||| ||||| || ||||| || || Sbjct 188886 TGAGTGGGAACTGAGTT-CCATCTGGGTATACGTCCTTGGATTACTGTTGCATATTCAGC 188828 Query 162783 ACCTGTTGCAGCAGCATCGGCAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTC 162842 ||||||||||| || | || || ||| || | || ||| | |||||||| |||||| Sbjct 188827 TCCTGTTGCAGCTGCTACCGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTC 188768 Query 162843 TGACGCAATGCCCTTGGGTATCAGTGGTACATTCAACTACATGCTTGTCTTCCAAGCAGA 162902 ||| | ||||| || || || | |||| ||||||| ||| |||| ||||| ||||| Sbjct 188767 TGATGGTATGCCTTTAGGAATATCTTGTACTTTCAACTTTATGATTGTATTCCAGGCAGA 188708 Query 162903 GCACAACATTCTGATGCATCCCTTCCACATGTTGGGTGTCGCAGGTGTCTTCGGTGGTTC 162962 ||| ||||| || |||||||| || |||||||| ||||| || ||||| || | ||||| Sbjct 188707 GCATAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTATGCGGTTC 188648 Query 162963 ACTGTTC-AGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTG 163021 || ||| ||||| ||||| ||||||||||| || ||| | || | || || |||| Sbjct 188647 CCTATTCAAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGTTCAGGGAAACCACTG 188588 Query 163022 AAACTGAGTCACAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACATACAACATCG 163081 ||| || || || | ||||||| || |||||||| |||||||| || || || | Sbjct 188587 AAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAGACTTATAATATTG 188528 Query 163082 TCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATATGC 163124 | || || |||||||| || || || || |||||||||||||| Sbjct 188527 TGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGC 188485 Score = 239 bits (264), Expect = 5e-58 Identities = 251/330 (76%), Gaps = 0/330 (0%) Strand=Plus/Plus Query 163042 GGTTACAAGTTCGGTCAAGAAGAAGAGACATACAACATCGTCGCAGCCCATGGTTACTTC 163101 ||||||| || |||||||| |||||||| || || || || || || |||||||| || Sbjct 12116249 GGTTACAGATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTT 12116308 Query 163102 GGTCGTTTGATCTTCCAATATGCATCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTT 163161 || || || |||||||||||||| || |||||||| ||||| || ||||||||| | Sbjct 12116309 GGCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTG 12116368 Query 163162 GCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCAACCATGGCATTC 163221 ||||| |||||||| || || || |||||||| || | || | || ||||| ||| Sbjct 12116369 GCTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTC 12116428 Query 163222 AACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAAC 163281 || || ||||| ||||| |||||||| || | ||||| | || ||||| || | || Sbjct 12116429 AATCTAAACGGATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAAT 12116488 Query 163282 ACCTGGGCAGACGTTCTGAACCGTGCAGGTTTGGGTATGGAAGTTATGCACGAGCGCAAT 163341 || ||||| || | | |||||||| | | ||||||||||| |||||||| || ||| Sbjct 12116489 ACTTGGGCTGATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAAT 12116548 Query 163342 GCTCACAACTTCCCACTTGACCTGGCAGCT 163371 |||||||||||||| || ||||| || ||| Sbjct 12116549 GCTCACAACTTCCCTCTAGACCTAGCTGCT 12116578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557583916362400