Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= NC_015286.1 Length=175230 Score E Sequences producing significant alignments: (Bits) Value seq4 268 1e-66 seq11 102 9e-17 seq5 91.5 2e-13 >seq4 Length=26741765 Score = 268 bits (296), Expect = 1e-66 Identities = 305/404 (75%), Gaps = 4/404 (1%) Strand=Plus/Minus Query 167426 TGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCCTGGATCTGTGTTGCATACTCTGC 167485 |||||||||||| || || ||| ||||| ||||| ||||| ||||||||| || || Sbjct 188886 TGAGTGGGAACTGAGTT-CCATCTGGGTATACGTCCTTGGATTACTGTTGCATATTCAGC 188828 Query 167486 TCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTC 167545 ||| || || || || | ||||| ||| | | || ||| | |||||||| |||||| Sbjct 188827 TCCTGTTGCAGCTGCTACCGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTC 188768 Query 167546 TGACGCGATGCCTCTTGGTATCTCTGGTACATTCAACTACATGCTTGTCTTCCAAGCAGA 167605 ||| | |||||| | || || ||| |||| ||||||| ||| |||| ||||| ||||| Sbjct 188767 TGATGGTATGCCTTTAGGAATATCTTGTACTTTCAACTTTATGATTGTATTCCAGGCAGA 188708 Query 167606 GCACAACATCCTGATGCACCCCTTCCATATGCTCGGCGTTGCTGGCGTATTCGGCGGTTC 167665 ||| |||||||| ||||| || || || ||| | || || ||||| ||||| ||||||| Sbjct 188707 GCATAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTATGCGGTTC 188648 Query 167666 TCTGTTCA-GTGCAATGCACGGTTCTCTGGTTACCTCTTCGCTGGTTC-GTGAAACCACC 167723 || |||| |||| ||||| |||||| |||| |||||| | | |||| | |||||||| Sbjct 188647 CCTATTCAAGTGCTATGCATGGTTCTTTGGTAACCTCTA-GTTTGTTCAGGGAAACCACT 188589 Query 167724 GAAACTGAGTCCCAGAACTATGGTTACAAGTTCGGTCAGGAAGAAGAGACGTATAACATC 167783 |||| || || || | ||||||| || ||||| || |||||||| ||||| || Sbjct 188588 GAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAGACTTATAATATT 188529 Query 167784 GTCGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGC 167827 || || ||||||||||| || || || | ||||||||||| || Sbjct 188528 GTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGC 188485 Score = 206 bits (228), Expect = 3e-48 Identities = 256/360 (71%), Gaps = 0/360 (0%) Strand=Plus/Plus Query 167715 GAAACCACCGAAACTGAGTCCCAGAACTATGGTTACAAGTTCGGTCAGGAAGAAGAGACG 167774 |||||||| |||| || || || | ||||||| || ||||| || |||||||| Sbjct 12116219 GAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAGACT 12116278 Query 167775 TATAACATCGTCGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCATCCTTC 167834 ||||| || || || ||||||||||| || || || | ||||||||||| || || Sbjct 12116279 TATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTTT 12116338 Query 167835 AACAACTCCCGCTCGCTGCACTTCTTCTTGGCAGCATGGCCTGTTGTTGGTATCTGGTNN 167894 |||||||| || || | |||||||||||||| || |||||||| || || || |||| Sbjct 12116339 AACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATTTGGTTC 12116398 Query 167895 NNNNNNNNNNNNNNNNNNNNNNNNNNATTCAACCTGAACGGTTTCAACTTCAACCAGTCT 167954 ||||| || ||||| ||||| |||||||| ||| Sbjct 12116399 ACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTCAACCAATCT 12116458 Query 167955 ATCCTTGATAGTTCTGGTAAGGTTCTGCCTACTTGGGCAGACGTGCTCAACCGTGCTGGT 168014 | ||||||| ||| ||| | ||||||||| || | ||||||||||| | Sbjct 12116459 GTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGTGCTAAT 12116518 Query 168015 CTGGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCTCTCGACCTTGCTGCT 168074 || ||||||||||| |||||||| ||||||||||||||||||||||| ||||| |||||| Sbjct 12116519 CTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCT 12116578 >seq11 Length=27185770 Score = 102 bits (112), Expect = 9e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 168001 TCAACCGTGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCTC 168060 ||||||||||| ||| ||||||||||| |||||||| |||||||||||||||||||||| Sbjct 25910912 TCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTC 25910853 Query 168061 TCGACCTTGCTGCT 168074 | ||||| |||||| Sbjct 25910852 TAGACCTAGCTGCT 25910839 >seq5 Length=38039368 Score = 91.5 bits (100), Expect = 2e-13 Identities = 100/132 (76%), Gaps = 1/132 (1%) Strand=Plus/Minus Query 167922 TTCAACCTGAACGGTTTCAACTTCAACCAGTCTATCCTTGATAGTTCTGGTAAGGTTCTG 167981 ||||| || ||||| ||||| |||||||| ||| | ||||||| ||| ||| | Sbjct 16640560 TTCAATCTAAACGGGTTCAATTTCAACCA-TCTGTAGTTGATAGCCAAGGTCGCGTTATT 16640502 Query 167982 CCTACTTGGGCAGACGTGCTCAACCGTGCTGGTCTGGGTATGGAAGTTATGCACGAGCGT 168041 ||||||||| || | |||||||||| ||| | ||||||||| |||||||| ||| Sbjct 16640501 TATACTTGGGCTGATATCATCAACCGTGCAAATCTTGCTATGGAAGTAATGCACGAACGT 16640442 Query 168042 AATGCTCACAAC 168053 ||||||||| || Sbjct 16640441 AATGCTCACCAC 16640430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560607915908800